miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23960 5' -57.7 NC_005262.1 + 16264 0.67 0.542696
Target:  5'- aCCAUGAAcCGAcacaaugccuugcuGCGCGCcgcucGCGGCGUg- -3'
miRNA:   3'- aGGUACUU-GCU--------------CGCGUG-----CGCCGCGua -5'
23960 5' -57.7 NC_005262.1 + 53902 0.68 0.440651
Target:  5'- gUCGUGGACGGGUcuGCGCGacgcgcugaagcaGGCGCAg -3'
miRNA:   3'- aGGUACUUGCUCG--CGUGCg------------CCGCGUa -5'
23960 5' -57.7 NC_005262.1 + 55295 0.68 0.444491
Target:  5'- -gCAUGuccGACGAGU--ACGCGGCGCAg -3'
miRNA:   3'- agGUAC---UUGCUCGcgUGCGCCGCGUa -5'
23960 5' -57.7 NC_005262.1 + 36586 0.68 0.454173
Target:  5'- uUCCuGUGAGCGugaAGCGCuu-CGGCGCAa -3'
miRNA:   3'- -AGG-UACUUGC---UCGCGugcGCCGCGUa -5'
23960 5' -57.7 NC_005262.1 + 5169 0.68 0.454173
Target:  5'- aUCgGUGAcggccggcgucGCGGGCGCggGCGCGGCcgGCGc -3'
miRNA:   3'- -AGgUACU-----------UGCUCGCG--UGCGCCG--CGUa -5'
23960 5' -57.7 NC_005262.1 + 58438 0.68 0.454173
Target:  5'- cCCGUcaaGGACGccccggcaGGCGUGCGCGGCGUc- -3'
miRNA:   3'- aGGUA---CUUGC--------UCGCGUGCGCCGCGua -5'
23960 5' -57.7 NC_005262.1 + 43897 0.67 0.514494
Target:  5'- -aCAUGAAguCGAagGCGUcaGCGCGGCGCc- -3'
miRNA:   3'- agGUACUU--GCU--CGCG--UGCGCCGCGua -5'
23960 5' -57.7 NC_005262.1 + 36719 0.67 0.524873
Target:  5'- uUCCGUuguggGGGCuGGCGC-CGCGGgCGCAg -3'
miRNA:   3'- -AGGUA-----CUUGcUCGCGuGCGCC-GCGUa -5'
23960 5' -57.7 NC_005262.1 + 51840 0.67 0.535332
Target:  5'- -aCGUGcGCGaAGUGCugaaGCGCGGCGCc- -3'
miRNA:   3'- agGUACuUGC-UCGCG----UGCGCCGCGua -5'
23960 5' -57.7 NC_005262.1 + 56543 0.7 0.38896
Target:  5'- aUCCGUcGAGC-AGCGCGaGgGGCGCAUc -3'
miRNA:   3'- -AGGUA-CUUGcUCGCGUgCgCCGCGUA- -5'
23960 5' -57.7 NC_005262.1 + 23669 0.7 0.362952
Target:  5'- aUCCGUGGAUGc-CGCccgaGCGGCGCGUg -3'
miRNA:   3'- -AGGUACUUGCucGCGug--CGCCGCGUA- -5'
23960 5' -57.7 NC_005262.1 + 17324 0.7 0.346297
Target:  5'- aCCGcaagGAgcGCGAGCGCGuCGCGGCGa-- -3'
miRNA:   3'- aGGUa---CU--UGCUCGCGU-GCGCCGCgua -5'
23960 5' -57.7 NC_005262.1 + 20567 0.77 0.13313
Target:  5'- gCCAaGAcgagcagcccgGCGAGCaGCGCGCGGCGCGc -3'
miRNA:   3'- aGGUaCU-----------UGCUCG-CGUGCGCCGCGUa -5'
23960 5' -57.7 NC_005262.1 + 17479 0.76 0.148487
Target:  5'- uUCCA-GGACGaAGCGCGCGCcGCGCGc -3'
miRNA:   3'- -AGGUaCUUGC-UCGCGUGCGcCGCGUa -5'
23960 5' -57.7 NC_005262.1 + 4547 0.74 0.199314
Target:  5'- cUUCAU---CGuGCGCGCGCGGCGCAUc -3'
miRNA:   3'- -AGGUAcuuGCuCGCGUGCGCCGCGUA- -5'
23960 5' -57.7 NC_005262.1 + 12794 0.74 0.20462
Target:  5'- cCCGUGAGCauuGGGCgGCGCGCagccGGCGCGUg -3'
miRNA:   3'- aGGUACUUG---CUCG-CGUGCG----CCGCGUA- -5'
23960 5' -57.7 NC_005262.1 + 35368 0.74 0.215599
Target:  5'- aCCGgcgGAaauauGCuGGCGCACGCGGCGCu- -3'
miRNA:   3'- aGGUa--CU-----UGcUCGCGUGCGCCGCGua -5'
23960 5' -57.7 NC_005262.1 + 60489 0.72 0.27824
Target:  5'- aUCA-GGGCGAGaCGCcgggccGCGCGGCGCAg -3'
miRNA:   3'- aGGUaCUUGCUC-GCG------UGCGCCGCGUa -5'
23960 5' -57.7 NC_005262.1 + 29868 0.72 0.285245
Target:  5'- gCC-UGAccgACGAGgaGCGCGCGGCGCu- -3'
miRNA:   3'- aGGuACU---UGCUCg-CGUGCGCCGCGua -5'
23960 5' -57.7 NC_005262.1 + 61169 0.72 0.292388
Target:  5'- ----cGGGCGAGCugacggGCGCGCGGCGCu- -3'
miRNA:   3'- agguaCUUGCUCG------CGUGCGCCGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.