miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23961 3' -61.2 NC_005262.1 + 11471 0.67 0.398137
Target:  5'- aCCGCGCUC-GCGCGCGAGcacauGGGcCGc- -3'
miRNA:   3'- -GGCGCGGGcCGCGCGCUC-----UUCaGCua -5'
23961 3' -61.2 NC_005262.1 + 15309 0.67 0.398137
Target:  5'- gCCGCGCaUgGGCGgGCG-GccGUCGAg -3'
miRNA:   3'- -GGCGCG-GgCCGCgCGCuCuuCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 1691 0.67 0.398137
Target:  5'- uCCGCgacgcgguuGCCgCGGCG-GCGAcgcauGAGGUCGAg -3'
miRNA:   3'- -GGCG---------CGG-GCCGCgCGCU-----CUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 17084 0.67 0.394684
Target:  5'- gCGCGCCCgucgacgcGGCGggcCGCGAGGAGguccaccgcgcggCGAUg -3'
miRNA:   3'- gGCGCGGG--------CCGC---GCGCUCUUCa------------GCUA- -5'
23961 3' -61.2 NC_005262.1 + 60872 0.67 0.389542
Target:  5'- aUGCGCgCGaaaGCGCGAuGAAGUCGGc -3'
miRNA:   3'- gGCGCGgGCcg-CGCGCU-CUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 58648 0.67 0.389542
Target:  5'- -aGCgGCCgGGCGCGCGAGuucuaCGAUc -3'
miRNA:   3'- ggCG-CGGgCCGCGCGCUCuuca-GCUA- -5'
23961 3' -61.2 NC_005262.1 + 42928 0.67 0.389542
Target:  5'- gUCGuCGUCCGGCGCGCGc---GUCGu- -3'
miRNA:   3'- -GGC-GCGGGCCGCGCGCucuuCAGCua -5'
23961 3' -61.2 NC_005262.1 + 57042 0.67 0.386138
Target:  5'- cCCG-GCCacgagcacaacgaGGCGCGCGAGAuGUuCGAc -3'
miRNA:   3'- -GGCgCGGg------------CCGCGCGCUCUuCA-GCUa -5'
23961 3' -61.2 NC_005262.1 + 12558 0.67 0.381069
Target:  5'- aCCGUagCCGGCGCGCauGAGGAGccCGGUg -3'
miRNA:   3'- -GGCGcgGGCCGCGCG--CUCUUCa-GCUA- -5'
23961 3' -61.2 NC_005262.1 + 34494 0.68 0.372719
Target:  5'- uCCGCGCggCGGCGCGCGAcuucugCGAg -3'
miRNA:   3'- -GGCGCGg-GCCGCGCGCUcuuca-GCUa -5'
23961 3' -61.2 NC_005262.1 + 16092 0.68 0.364495
Target:  5'- gCCGcCGCCCGGCGCgGUGcuuGgcGUCa-- -3'
miRNA:   3'- -GGC-GCGGGCCGCG-CGCu--CuuCAGcua -5'
23961 3' -61.2 NC_005262.1 + 17271 0.68 0.356398
Target:  5'- gCCGCGCUgGGCugcuGCGCGGGcAggggcgucgcGGUCGGa -3'
miRNA:   3'- -GGCGCGGgCCG----CGCGCUC-U----------UCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 18745 0.68 0.348427
Target:  5'- gCGCgGCUCGGCGCGuCGuAGAuGUCGu- -3'
miRNA:   3'- gGCG-CGGGCCGCGC-GC-UCUuCAGCua -5'
23961 3' -61.2 NC_005262.1 + 17491 0.68 0.332871
Target:  5'- gCGCGCgCC-GCGCGCGAcgcGUCGAUc -3'
miRNA:   3'- gGCGCG-GGcCGCGCGCUcuuCAGCUA- -5'
23961 3' -61.2 NC_005262.1 + 48047 0.68 0.332871
Target:  5'- gCCGCGCCCGcaaGCGCGuc-GGUCGc- -3'
miRNA:   3'- -GGCGCGGGCcg-CGCGCucuUCAGCua -5'
23961 3' -61.2 NC_005262.1 + 17106 0.68 0.332871
Target:  5'- gCGCGCgCGGCGCugacugcaucgGCGGGc-GUCGGUg -3'
miRNA:   3'- gGCGCGgGCCGCG-----------CGCUCuuCAGCUA- -5'
23961 3' -61.2 NC_005262.1 + 21654 0.69 0.317831
Target:  5'- aCCGgGCCCGGCGCcGCGuAGAc--CGGc -3'
miRNA:   3'- -GGCgCGGGCCGCG-CGC-UCUucaGCUa -5'
23961 3' -61.2 NC_005262.1 + 61143 0.69 0.303307
Target:  5'- aCGcCGCCCGGCGCcGCGcAGGcaugGGcCGAUc -3'
miRNA:   3'- gGC-GCGGGCCGCG-CGC-UCU----UCaGCUA- -5'
23961 3' -61.2 NC_005262.1 + 19389 0.69 0.303307
Target:  5'- aUCGUGUgCGGCGCGCGGGuGGUa--- -3'
miRNA:   3'- -GGCGCGgGCCGCGCGCUCuUCAgcua -5'
23961 3' -61.2 NC_005262.1 + 57449 0.69 0.303307
Target:  5'- uCCGCggauGCCgCGGCG-GCGAcgaugGAGGUCGAg -3'
miRNA:   3'- -GGCG----CGG-GCCGCgCGCU-----CUUCAGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.