miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23961 5' -52.1 NC_005262.1 + 46443 0.66 0.915598
Target:  5'- uGAUCGcGUCGaUCUucucgcggaucgccgCGACGCGCu-- -3'
miRNA:   3'- gCUAGCuCAGCaAGA---------------GCUGCGCGuau -5'
23961 5' -52.1 NC_005262.1 + 6551 0.66 0.913063
Target:  5'- -uGUCGAgGUUGUUCaccugauuggCGGCGCGCGUc -3'
miRNA:   3'- gcUAGCU-CAGCAAGa---------GCUGCGCGUAu -5'
23961 5' -52.1 NC_005262.1 + 26051 0.66 0.899723
Target:  5'- uGA-CGAcGUUGUUUgccccuUCGACGCGCAg- -3'
miRNA:   3'- gCUaGCU-CAGCAAG------AGCUGCGCGUau -5'
23961 5' -52.1 NC_005262.1 + 42922 0.66 0.899723
Target:  5'- -cGUCGcGUCGUcgUC-CGGCGCGCGc- -3'
miRNA:   3'- gcUAGCuCAGCA--AGaGCUGCGCGUau -5'
23961 5' -52.1 NC_005262.1 + 14445 0.66 0.892644
Target:  5'- ---cCGAGUCGUcagCgagcgCGGCGCGCGc- -3'
miRNA:   3'- gcuaGCUCAGCAa--Ga----GCUGCGCGUau -5'
23961 5' -52.1 NC_005262.1 + 2601 0.66 0.892644
Target:  5'- uGAccuUCGugaGGUCGUUCUCGuagcgcCGCGCGc- -3'
miRNA:   3'- gCU---AGC---UCAGCAAGAGCu-----GCGCGUau -5'
23961 5' -52.1 NC_005262.1 + 5524 0.66 0.888267
Target:  5'- gGAUCGucgucgcccagauauGGcUCGUgCUCGAUGCGCGg- -3'
miRNA:   3'- gCUAGC---------------UC-AGCAaGAGCUGCGCGUau -5'
23961 5' -52.1 NC_005262.1 + 46749 0.67 0.869822
Target:  5'- uCGAUCGccgccacgccGGUCGUacaggCggCGACGCGCGg- -3'
miRNA:   3'- -GCUAGC----------UCAGCAa----Ga-GCUGCGCGUau -5'
23961 5' -52.1 NC_005262.1 + 45906 0.67 0.853348
Target:  5'- cCGAaaUCGGG-CGgugCUCGAUGUGCGUu -3'
miRNA:   3'- -GCU--AGCUCaGCaa-GAGCUGCGCGUAu -5'
23961 5' -52.1 NC_005262.1 + 11930 0.67 0.853348
Target:  5'- uCGGUCGugcucgcGUCGUUCgCGGCGcCGCGc- -3'
miRNA:   3'- -GCUAGCu------CAGCAAGaGCUGC-GCGUau -5'
23961 5' -52.1 NC_005262.1 + 43464 0.68 0.835936
Target:  5'- gGAUCGAGUCGagccgcUUCGugGCgGCGa- -3'
miRNA:   3'- gCUAGCUCAGCaa----GAGCugCG-CGUau -5'
23961 5' -52.1 NC_005262.1 + 40466 0.68 0.835936
Target:  5'- uGGUCGAGcgCGUgCUCG-UGCGCGg- -3'
miRNA:   3'- gCUAGCUCa-GCAaGAGCuGCGCGUau -5'
23961 5' -52.1 NC_005262.1 + 36674 0.68 0.835936
Target:  5'- gGAUCGucGUCGUccagCUCGGCGuCGUAg- -3'
miRNA:   3'- gCUAGCu-CAGCAa---GAGCUGC-GCGUau -5'
23961 5' -52.1 NC_005262.1 + 26883 0.68 0.797615
Target:  5'- aCGAUCGAGUgggccggcgcgucCGUUgUCGAucaucCGCGCGa- -3'
miRNA:   3'- -GCUAGCUCA-------------GCAAgAGCU-----GCGCGUau -5'
23961 5' -52.1 NC_005262.1 + 6232 0.7 0.716169
Target:  5'- gGAgcCGcGUCGaacgUCUCGAUGCGCGUGa -3'
miRNA:   3'- gCUa-GCuCAGCa---AGAGCUGCGCGUAU- -5'
23961 5' -52.1 NC_005262.1 + 52565 0.7 0.716169
Target:  5'- gCGAUCGucgcuGUCGagCUCGGCGCGg--- -3'
miRNA:   3'- -GCUAGCu----CAGCaaGAGCUGCGCguau -5'
23961 5' -52.1 NC_005262.1 + 14855 0.7 0.705366
Target:  5'- aCGGUCGAGcUCGUUCgagaUGGCaaGCGCAUc -3'
miRNA:   3'- -GCUAGCUC-AGCAAGa---GCUG--CGCGUAu -5'
23961 5' -52.1 NC_005262.1 + 7177 0.7 0.69449
Target:  5'- uGGUCGAGUCGUagcugcccuUCgUCGcccACGCGCGg- -3'
miRNA:   3'- gCUAGCUCAGCA---------AG-AGC---UGCGCGUau -5'
23961 5' -52.1 NC_005262.1 + 46301 0.72 0.60621
Target:  5'- cCGAUCGAcgcGUCGcgCgCGGCGCGCGc- -3'
miRNA:   3'- -GCUAGCU---CAGCaaGaGCUGCGCGUau -5'
23961 5' -52.1 NC_005262.1 + 58921 0.73 0.562285
Target:  5'- aGGUCGAGUCGgcgCUCGGCaagcuGCGCc-- -3'
miRNA:   3'- gCUAGCUCAGCaa-GAGCUG-----CGCGuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.