Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23962 | 3' | -51 | NC_005262.1 | + | 12910 | 0.68 | 0.816867 |
Target: 5'- aGGUGAUugacgagcgcgcCGUGCGAUugcGUCGGCAccUGCg -3' miRNA: 3'- -UUACUA------------GCACGCUAu--CGGCCGUu-ACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 45692 | 0.68 | 0.816867 |
Target: 5'- ----uUCGUGCGcaucgagGGCCGGCAGccgGCc -3' miRNA: 3'- uuacuAGCACGCua-----UCGGCCGUUa--CG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 33687 | 0.68 | 0.815904 |
Target: 5'- --cGAUCGUgggcuucGCGGcGGCCGGC-GUGUc -3' miRNA: 3'- uuaCUAGCA-------CGCUaUCGGCCGuUACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 30999 | 0.69 | 0.79723 |
Target: 5'- ---cGUCGaacGCGAUGGCCGGCGcgccgccgGUGUc -3' miRNA: 3'- uuacUAGCa--CGCUAUCGGCCGU--------UACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 50829 | 0.69 | 0.787129 |
Target: 5'- --cGGUCGUcgacGcCGAgccGGUCGGCGAUGCc -3' miRNA: 3'- uuaCUAGCA----C-GCUa--UCGGCCGUUACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 43286 | 0.69 | 0.787129 |
Target: 5'- --aGGUCGUcGCGAgcGCCGcGCcgauGGUGCg -3' miRNA: 3'- uuaCUAGCA-CGCUauCGGC-CG----UUACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 17234 | 0.69 | 0.766423 |
Target: 5'- cGUGGUCGUcgugggcgucGCGGgagcggcGGCCGGCGccGCg -3' miRNA: 3'- uUACUAGCA----------CGCUa------UCGGCCGUuaCG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 17318 | 0.69 | 0.766423 |
Target: 5'- cAUG-UCGacgggcUGCGucGUGGCCGGCGcgGCa -3' miRNA: 3'- uUACuAGC------ACGC--UAUCGGCCGUuaCG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 12258 | 0.69 | 0.766423 |
Target: 5'- cGAUGGUCGggcaccUGuCGAUcgcGGCCGGCGA-GCc -3' miRNA: 3'- -UUACUAGC------AC-GCUA---UCGGCCGUUaCG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 5305 | 0.69 | 0.765371 |
Target: 5'- --cGGUCGagGCGGUcggagcuGGCCGGCAGgaGCu -3' miRNA: 3'- uuaCUAGCa-CGCUA-------UCGGCCGUUa-CG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 21715 | 0.7 | 0.745125 |
Target: 5'- --aGAUCGUcuCGAUcuGGCCGGCGggaaucGUGCu -3' miRNA: 3'- uuaCUAGCAc-GCUA--UCGGCCGU------UACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 43142 | 0.7 | 0.745125 |
Target: 5'- --gGAUC-UGUGAggAGCCGGCAGcgGCc -3' miRNA: 3'- uuaCUAGcACGCUa-UCGGCCGUUa-CG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 35991 | 0.7 | 0.723339 |
Target: 5'- --gGAUCGUGCGuuccacguGCCGcGCgAGUGCc -3' miRNA: 3'- uuaCUAGCACGCuau-----CGGC-CG-UUACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 15464 | 0.7 | 0.712294 |
Target: 5'- --cGGUCGUGcCGAgcuucuucUGGCCguaGGCGAUGUa -3' miRNA: 3'- uuaCUAGCAC-GCU--------AUCGG---CCGUUACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 12420 | 0.72 | 0.610552 |
Target: 5'- --cGAUCGaGaCGGUAGCCGaGcCGAUGCg -3' miRNA: 3'- uuaCUAGCaC-GCUAUCGGC-C-GUUACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 60245 | 0.72 | 0.609416 |
Target: 5'- --aGcgCGUcaaggccGCGAUAcGCCGGCAGUGUc -3' miRNA: 3'- uuaCuaGCA-------CGCUAU-CGGCCGUUACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 60912 | 0.73 | 0.576599 |
Target: 5'- -cUGAUCGaagGCGAUAGCgGcGCAAcgGCa -3' miRNA: 3'- uuACUAGCa--CGCUAUCGgC-CGUUa-CG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 46887 | 0.73 | 0.554192 |
Target: 5'- uGUGGUgCgGUGCGGU-GCgGGCGGUGCg -3' miRNA: 3'- uUACUA-G-CACGCUAuCGgCCGUUACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 5166 | 0.73 | 0.543084 |
Target: 5'- -cUGAUCG-GUGAcGGCCGGCGucGCg -3' miRNA: 3'- uuACUAGCaCGCUaUCGGCCGUuaCG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 22907 | 0.74 | 0.521098 |
Target: 5'- cGGUGGUCGguucucgugUGCGGUGccgcuGCCGGCAuuuUGCg -3' miRNA: 3'- -UUACUAGC---------ACGCUAU-----CGGCCGUu--ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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