miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23962 5' -55.1 NC_005262.1 + 13725 0.66 0.739521
Target:  5'- gUGCUgGUCggU-GGCACGCCGUgccagGCa -3'
miRNA:   3'- gACGAgCGGuuGgUCGUGCGGUAa----CG- -5'
23962 5' -55.1 NC_005262.1 + 19658 0.66 0.739521
Target:  5'- -cGCgcgCGuCCGGCCGGaacgcgggaACGCCGaUGCg -3'
miRNA:   3'- gaCGa--GC-GGUUGGUCg--------UGCGGUaACG- -5'
23962 5' -55.1 NC_005262.1 + 33492 0.66 0.736367
Target:  5'- -cGCUCGCgGucugggccuugucgaCAGCGCGCUcgAUUGCc -3'
miRNA:   3'- gaCGAGCGgUug-------------GUCGUGCGG--UAACG- -5'
23962 5' -55.1 NC_005262.1 + 24823 0.66 0.728971
Target:  5'- -aGCUCGCgaucgCGGCCGGCGCcguGCCGaucacccUGCg -3'
miRNA:   3'- gaCGAGCG-----GUUGGUCGUG---CGGUa------ACG- -5'
23962 5' -55.1 NC_005262.1 + 19541 0.66 0.728971
Target:  5'- -cGCgCGUCAGCCaguGGCGCgaGCCAUcGCu -3'
miRNA:   3'- gaCGaGCGGUUGG---UCGUG--CGGUAaCG- -5'
23962 5' -55.1 NC_005262.1 + 22609 0.66 0.728971
Target:  5'- -cGgUCGCCGGgCGcGCACGCgAUcGCg -3'
miRNA:   3'- gaCgAGCGGUUgGU-CGUGCGgUAaCG- -5'
23962 5' -55.1 NC_005262.1 + 38684 0.66 0.725786
Target:  5'- -aGCgCGCCAGCUcauccuccgugagcGGCGCGUCGUcGUg -3'
miRNA:   3'- gaCGaGCGGUUGG--------------UCGUGCGGUAaCG- -5'
23962 5' -55.1 NC_005262.1 + 51768 0.66 0.718324
Target:  5'- aUGCcggggacgCGCgCGACCAGauuGCGCCG-UGCa -3'
miRNA:   3'- gACGa-------GCG-GUUGGUCg--UGCGGUaACG- -5'
23962 5' -55.1 NC_005262.1 + 10489 0.66 0.718324
Target:  5'- -cGCUCGCCuuguCCAuCGUGCCcUUGCu -3'
miRNA:   3'- gaCGAGCGGuu--GGUcGUGCGGuAACG- -5'
23962 5' -55.1 NC_005262.1 + 44558 0.66 0.718324
Target:  5'- cCUGUucUCGCCGGCCGaUACGCag--GCa -3'
miRNA:   3'- -GACG--AGCGGUUGGUcGUGCGguaaCG- -5'
23962 5' -55.1 NC_005262.1 + 9704 0.66 0.718324
Target:  5'- -gGCUCGCgccaAACCcgAGgGCGCCAUacGCg -3'
miRNA:   3'- gaCGAGCGg---UUGG--UCgUGCGGUAa-CG- -5'
23962 5' -55.1 NC_005262.1 + 63055 0.66 0.718324
Target:  5'- -aGCaUGC--GCCGGCACGUCAUcGCg -3'
miRNA:   3'- gaCGaGCGguUGGUCGUGCGGUAaCG- -5'
23962 5' -55.1 NC_005262.1 + 58960 0.66 0.718324
Target:  5'- -aGCagUCGaaCCAGCCGGC-CGCCGgcgGCc -3'
miRNA:   3'- gaCG--AGC--GGUUGGUCGuGCGGUaa-CG- -5'
23962 5' -55.1 NC_005262.1 + 46253 0.66 0.718324
Target:  5'- gCUGC-CGCCucgcgcgcGACC-GCGUGCCcgUGCa -3'
miRNA:   3'- -GACGaGCGG--------UUGGuCGUGCGGuaACG- -5'
23962 5' -55.1 NC_005262.1 + 20407 0.66 0.718324
Target:  5'- -aGCUCGCCGccgauGCUcGCAuCGCCGaagaUGCu -3'
miRNA:   3'- gaCGAGCGGU-----UGGuCGU-GCGGUa---ACG- -5'
23962 5' -55.1 NC_005262.1 + 19021 0.66 0.718324
Target:  5'- -aGCUCgGCCuGCC-GCGCGCUg--GCg -3'
miRNA:   3'- gaCGAG-CGGuUGGuCGUGCGGuaaCG- -5'
23962 5' -55.1 NC_005262.1 + 52700 0.66 0.718324
Target:  5'- uUGCccCGCCAagcguGCCAGCGgGCCGcccuUUGg -3'
miRNA:   3'- gACGa-GCGGU-----UGGUCGUgCGGU----AACg -5'
23962 5' -55.1 NC_005262.1 + 55608 0.66 0.718324
Target:  5'- gCUGCggCGCCuuCCGGCGUGCUgaUGUc -3'
miRNA:   3'- -GACGa-GCGGuuGGUCGUGCGGuaACG- -5'
23962 5' -55.1 NC_005262.1 + 23345 0.66 0.707591
Target:  5'- -cGCUCGaCCAcgGCCGGCgugaaGCGCgCGgcgGCg -3'
miRNA:   3'- gaCGAGC-GGU--UGGUCG-----UGCG-GUaa-CG- -5'
23962 5' -55.1 NC_005262.1 + 2001 0.66 0.707591
Target:  5'- gUGCUCG-CAugCucCACGCCAcgGCg -3'
miRNA:   3'- gACGAGCgGUugGucGUGCGGUaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.