Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23964 | 3' | -56.7 | NC_005262.1 | + | 42168 | 0.69 | 0.472004 |
Target: 5'- cGUcGCCGUCGCCGUCgCACUcCGg-- -3' miRNA: 3'- aCAaCGGCGGCGGUAG-GUGGuGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 33235 | 0.69 | 0.47599 |
Target: 5'- -cUUGCUGCCGUCGUCCuucuugccagugucgGCCuucgGCGUUGc -3' miRNA: 3'- acAACGGCGGCGGUAGG---------------UGG----UGCAAC- -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 31624 | 0.7 | 0.452331 |
Target: 5'- --cUGCCGCCGCCG-CCGCCu----- -3' miRNA: 3'- acaACGGCGGCGGUaGGUGGugcaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 45149 | 0.7 | 0.433115 |
Target: 5'- --aUGCCGCUGCUcacGUCCACC-CGg-- -3' miRNA: 3'- acaACGGCGGCGG---UAGGUGGuGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 6348 | 0.7 | 0.429329 |
Target: 5'- cGUcGCCGCCGCggCAUCCGCggacggugccggaGCGUUGu -3' miRNA: 3'- aCAaCGGCGGCG--GUAGGUGg------------UGCAAC- -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 2650 | 0.7 | 0.423687 |
Target: 5'- ---cGCCGCCGCgAUCUGCUGCGc-- -3' miRNA: 3'- acaaCGGCGGCGgUAGGUGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 14127 | 0.71 | 0.369805 |
Target: 5'- ---cGCCGCCGaCCAUCC-CCAUGc-- -3' miRNA: 3'- acaaCGGCGGC-GGUAGGuGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 18765 | 0.71 | 0.387239 |
Target: 5'- gGUUGauccccaUGCuCGCCAUCUGCCGCGUg- -3' miRNA: 3'- aCAACg------GCG-GCGGUAGGUGGUGCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 32509 | 0.71 | 0.387239 |
Target: 5'- -aUUGUCGCCGCgAUCUugGCCGCGg-- -3' miRNA: 3'- acAACGGCGGCGgUAGG--UGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 1154 | 0.71 | 0.368948 |
Target: 5'- aUGcUGCCGCgcgggcuUGCCAUCCugCGCGg-- -3' miRNA: 3'- -ACaACGGCG-------GCGGUAGGugGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 4487 | 0.72 | 0.320803 |
Target: 5'- cGUcaUGCCcgaGCCGCCGUCCGgCAUGUc- -3' miRNA: 3'- aCA--ACGG---CGGCGGUAGGUgGUGCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 52763 | 0.72 | 0.313124 |
Target: 5'- cUGUUGCUGCgCGCgGUCUugCGCGa-- -3' miRNA: 3'- -ACAACGGCG-GCGgUAGGugGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 23246 | 0.72 | 0.313124 |
Target: 5'- gUGUUGCCcggcgcguaagaGCCGCCcgCCGCgACGaUGa -3' miRNA: 3'- -ACAACGG------------CGGCGGuaGGUGgUGCaAC- -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 18017 | 0.77 | 0.168953 |
Target: 5'- ---cGCCGCCGCCcUUCGCCGCGa-- -3' miRNA: 3'- acaaCGGCGGCGGuAGGUGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 4055 | 0.99 | 0.004627 |
Target: 5'- cGUUugGCCGCCGCCAUCCACCACGUUGu -3' miRNA: 3'- aCAA--CGGCGGCGGUAGGUGGUGCAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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