miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 3' -56.7 NC_005262.1 + 11759 0.66 0.662428
Target:  5'- aUGUaGgCGCCggcgaucgucauGCCGUCCAUCACGa-- -3'
miRNA:   3'- -ACAaCgGCGG------------CGGUAGGUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 926 0.66 0.677533
Target:  5'- aUGgUGUCGCCcaucuucacgggcguGCCAUCCucguACCGCGUc- -3'
miRNA:   3'- -ACaACGGCGG---------------CGGUAGG----UGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 4826 0.66 0.683982
Target:  5'- cGUgagGCCGCCGgCggCCGgCugGUUc -3'
miRNA:   3'- aCAa--CGGCGGCgGuaGGUgGugCAAc -5'
23964 3' -56.7 NC_005262.1 + 2386 0.66 0.640763
Target:  5'- ---gGCCGCCGCC-UUCGCCucGCGc-- -3'
miRNA:   3'- acaaCGGCGGCGGuAGGUGG--UGCaac -5'
23964 3' -56.7 NC_005262.1 + 42123 0.67 0.629914
Target:  5'- cGgcGCCGCCGCuCAggUugCGCGUg- -3'
miRNA:   3'- aCaaCGGCGGCG-GUagGugGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 34012 0.67 0.629914
Target:  5'- cUGgggUGCCG-CGCCGUCCGgCACu--- -3'
miRNA:   3'- -ACa--ACGGCgGCGGUAGGUgGUGcaac -5'
23964 3' -56.7 NC_005262.1 + 15305 0.68 0.565175
Target:  5'- --cUGCgGCUGCCGUCgCGCCGCc--- -3'
miRNA:   3'- acaACGgCGGCGGUAG-GUGGUGcaac -5'
23964 3' -56.7 NC_005262.1 + 21615 0.68 0.565175
Target:  5'- ---gGCgCGCCGUCGcCCAUCACGUa- -3'
miRNA:   3'- acaaCG-GCGGCGGUaGGUGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 25972 0.67 0.597417
Target:  5'- uUGUUGCCGCuCGCgCAguaCACgGCGg-- -3'
miRNA:   3'- -ACAACGGCG-GCG-GUag-GUGgUGCaac -5'
23964 3' -56.7 NC_005262.1 + 26789 0.67 0.608232
Target:  5'- ---cGCCGCCGauguCCGUCuCGCCgACGUUc -3'
miRNA:   3'- acaaCGGCGGC----GGUAG-GUGG-UGCAAc -5'
23964 3' -56.7 NC_005262.1 + 51490 0.67 0.608232
Target:  5'- ---aGCCGCaUGCCGUCgAaCACGUUGc -3'
miRNA:   3'- acaaCGGCG-GCGGUAGgUgGUGCAAC- -5'
23964 3' -56.7 NC_005262.1 + 25858 0.67 0.615816
Target:  5'- cGUUGgCGUCGCgGUCCAugcgcgccaaucguCCACGcUGa -3'
miRNA:   3'- aCAACgGCGGCGgUAGGU--------------GGUGCaAC- -5'
23964 3' -56.7 NC_005262.1 + 28563 0.67 0.619068
Target:  5'- ---aGCCGCUGCCgAUCgCGCCGCc--- -3'
miRNA:   3'- acaaCGGCGGCGG-UAG-GUGGUGcaac -5'
23964 3' -56.7 NC_005262.1 + 22818 0.67 0.619068
Target:  5'- ---cGCCGCCGCCAgaaacCCGaCGcCGUUGu -3'
miRNA:   3'- acaaCGGCGGCGGUa----GGUgGU-GCAAC- -5'
23964 3' -56.7 NC_005262.1 + 59232 0.66 0.683982
Target:  5'- ---cGCCGCCGCUggcgcgagAUgCGCCGCGc-- -3'
miRNA:   3'- acaaCGGCGGCGG--------UAgGUGGUGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.