Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23964 | 3' | -56.7 | NC_005262.1 | + | 14145 | 0.66 | 0.640763 |
Target: 5'- ---nGCCGCCGCCuugcaggCCGCCgaucGCGa-- -3' miRNA: 3'- acaaCGGCGGCGGua-----GGUGG----UGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 51464 | 0.66 | 0.640763 |
Target: 5'- --aUGCUGCCGCCG-CgCGCUGCGg-- -3' miRNA: 3'- acaACGGCGGCGGUaG-GUGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 6348 | 0.7 | 0.429329 |
Target: 5'- cGUcGCCGCCGCggCAUCCGCggacggugccggaGCGUUGu -3' miRNA: 3'- aCAaCGGCGGCG--GUAGGUGg------------UGCAAC- -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 45149 | 0.7 | 0.433115 |
Target: 5'- --aUGCCGCUGCUcacGUCCACC-CGg-- -3' miRNA: 3'- acaACGGCGGCGG---UAGGUGGuGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 4055 | 0.99 | 0.004627 |
Target: 5'- cGUUugGCCGCCGCCAUCCACCACGUUGu -3' miRNA: 3'- aCAA--CGGCGGCGGUAGGUGGUGCAAC- -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 4487 | 0.72 | 0.320803 |
Target: 5'- cGUcaUGCCcgaGCCGCCGUCCGgCAUGUc- -3' miRNA: 3'- aCA--ACGG---CGGCGGUAGGUgGUGCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 2650 | 0.7 | 0.423687 |
Target: 5'- ---cGCCGCCGCgAUCUGCUGCGc-- -3' miRNA: 3'- acaaCGGCGGCGgUAGGUGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 31624 | 0.7 | 0.452331 |
Target: 5'- --cUGCCGCCGCCG-CCGCCu----- -3' miRNA: 3'- acaACGGCGGCGGUaGGUGGugcaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 14127 | 0.71 | 0.369805 |
Target: 5'- ---cGCCGCCGaCCAUCC-CCAUGc-- -3' miRNA: 3'- acaaCGGCGGC-GGUAGGuGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 59115 | 0.69 | 0.462112 |
Target: 5'- --aUGCCGCgGCCcgAUCCgGCCGCGg-- -3' miRNA: 3'- acaACGGCGgCGG--UAGG-UGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 32509 | 0.71 | 0.387239 |
Target: 5'- -aUUGUCGCCGCgAUCUugGCCGCGg-- -3' miRNA: 3'- acAACGGCGGCGgUAGG--UGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 18765 | 0.71 | 0.387239 |
Target: 5'- gGUUGauccccaUGCuCGCCAUCUGCCGCGUg- -3' miRNA: 3'- aCAACg------GCG-GCGGUAGGUGGUGCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 17013 | 0.66 | 0.651604 |
Target: 5'- ---gGCuCGCCGCCGUUgaUACCGCGc-- -3' miRNA: 3'- acaaCG-GCGGCGGUAG--GUGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 33849 | 0.66 | 0.651604 |
Target: 5'- ---cGCCGCCGCCcgCguCCGgGUc- -3' miRNA: 3'- acaaCGGCGGCGGuaGguGGUgCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 3618 | 0.66 | 0.662428 |
Target: 5'- gGUUGCCGCCcacugGCCGagCGCCuucACGgcGg -3' miRNA: 3'- aCAACGGCGG-----CGGUagGUGG---UGCaaC- -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 11759 | 0.66 | 0.662428 |
Target: 5'- aUGUaGgCGCCggcgaucgucauGCCGUCCAUCACGa-- -3' miRNA: 3'- -ACAaCgGCGG------------CGGUAGGUGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 926 | 0.66 | 0.677533 |
Target: 5'- aUGgUGUCGCCcaucuucacgggcguGCCAUCCucguACCGCGUc- -3' miRNA: 3'- -ACaACGGCGG---------------CGGUAGG----UGGUGCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 4826 | 0.66 | 0.683982 |
Target: 5'- cGUgagGCCGCCGgCggCCGgCugGUUc -3' miRNA: 3'- aCAa--CGGCGGCgGuaGGUgGugCAAc -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 59232 | 0.66 | 0.683982 |
Target: 5'- ---cGCCGCCGCUggcgcgagAUgCGCCGCGc-- -3' miRNA: 3'- acaaCGGCGGCGG--------UAgGUGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 52763 | 0.72 | 0.313124 |
Target: 5'- cUGUUGCUGCgCGCgGUCUugCGCGa-- -3' miRNA: 3'- -ACAACGGCG-GCGgUAGGugGUGCaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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