miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 3' -56.7 NC_005262.1 + 26789 0.67 0.608232
Target:  5'- ---cGCCGCCGauguCCGUCuCGCCgACGUUc -3'
miRNA:   3'- acaaCGGCGGC----GGUAG-GUGG-UGCAAc -5'
23964 3' -56.7 NC_005262.1 + 20417 0.67 0.608232
Target:  5'- aUGUUGCagaGCgGCCccacuAUCCugCACGg-- -3'
miRNA:   3'- -ACAACGg--CGgCGG-----UAGGugGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 51490 0.67 0.608232
Target:  5'- ---aGCCGCaUGCCGUCgAaCACGUUGc -3'
miRNA:   3'- acaaCGGCG-GCGGUAGgUgGUGCAAC- -5'
23964 3' -56.7 NC_005262.1 + 16285 0.67 0.60174
Target:  5'- uUGcUGCgCGCCGCUcgcggcgugcaaccgAUCgACCGCGUUa -3'
miRNA:   3'- -ACaACG-GCGGCGG---------------UAGgUGGUGCAAc -5'
23964 3' -56.7 NC_005262.1 + 25972 0.67 0.597417
Target:  5'- uUGUUGCCGCuCGCgCAguaCACgGCGg-- -3'
miRNA:   3'- -ACAACGGCG-GCG-GUag-GUGgUGCaac -5'
23964 3' -56.7 NC_005262.1 + 20094 0.67 0.593098
Target:  5'- gGUUGCCGCCGUCGaCCuugauuucuuuguUCACGUc- -3'
miRNA:   3'- aCAACGGCGGCGGUaGGu------------GGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 43546 0.67 0.58663
Target:  5'- --gUGCCGCCuGCCGUCCGgauuccUCGCGc-- -3'
miRNA:   3'- acaACGGCGG-CGGUAGGU------GGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 15305 0.68 0.565175
Target:  5'- --cUGCgGCUGCCGUCgCGCCGCc--- -3'
miRNA:   3'- acaACGgCGGCGGUAG-GUGGUGcaac -5'
23964 3' -56.7 NC_005262.1 + 21615 0.68 0.565175
Target:  5'- ---gGCgCGCCGUCGcCCAUCACGUa- -3'
miRNA:   3'- acaaCG-GCGGCGGUaGGUGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 46249 0.68 0.554523
Target:  5'- cGcgGCUGCCGCCucgcgcgCgACCGCGUg- -3'
miRNA:   3'- aCaaCGGCGGCGGua-----GgUGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 51249 0.68 0.554523
Target:  5'- ---cGCCGCCGCgAccugCCGCCGCa--- -3'
miRNA:   3'- acaaCGGCGGCGgUa---GGUGGUGcaac -5'
23964 3' -56.7 NC_005262.1 + 15369 0.68 0.553461
Target:  5'- gGUcaUGCCGCCGuCCGUCguguucgggauuuCGCCGCGc-- -3'
miRNA:   3'- aCA--ACGGCGGC-GGUAG-------------GUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 40919 0.68 0.543931
Target:  5'- ---cGCCcucGCCGUCAUCCAgUACGUg- -3'
miRNA:   3'- acaaCGG---CGGCGGUAGGUgGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 18794 0.68 0.543931
Target:  5'- nUGUUGgCGuCCGCCGcCUGCCGCGcgGa -3'
miRNA:   3'- -ACAACgGC-GGCGGUaGGUGGUGCaaC- -5'
23964 3' -56.7 NC_005262.1 + 49493 0.68 0.543931
Target:  5'- gGUU-CCGCCGCCcUCCcguCCACGc-- -3'
miRNA:   3'- aCAAcGGCGGCGGuAGGu--GGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 7170 0.68 0.543931
Target:  5'- ---gGCCGCaUGCCG-CUACCGCGUa- -3'
miRNA:   3'- acaaCGGCG-GCGGUaGGUGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 53294 0.68 0.533405
Target:  5'- ---cGCUGCUGCUggCCGCCAUGcUGg -3'
miRNA:   3'- acaaCGGCGGCGGuaGGUGGUGCaAC- -5'
23964 3' -56.7 NC_005262.1 + 50295 0.68 0.533405
Target:  5'- --aUGCCGCCGCCuucgccUUCGCCAgCGa-- -3'
miRNA:   3'- acaACGGCGGCGGu-----AGGUGGU-GCaac -5'
23964 3' -56.7 NC_005262.1 + 33235 0.69 0.47599
Target:  5'- -cUUGCUGCCGUCGUCCuucuugccagugucgGCCuucgGCGUUGc -3'
miRNA:   3'- acAACGGCGGCGGUAGG---------------UGG----UGCAAC- -5'
23964 3' -56.7 NC_005262.1 + 42168 0.69 0.472004
Target:  5'- cGUcGCCGUCGCCGUCgCACUcCGg-- -3'
miRNA:   3'- aCAaCGGCGGCGGUAG-GUGGuGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.