Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23964 | 5' | -62.5 | NC_005262.1 | + | 29568 | 0.68 | 0.304852 |
Target: 5'- cGGCGcccaugucgaGCGUGuCGCCCgaagccgcgaucGCG-GGCGGCAg -3' miRNA: 3'- -CCGC----------UGCAUcGCGGG------------CGCaCCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 11647 | 0.68 | 0.312023 |
Target: 5'- cGGCGGCGccGGCGUCgCGCugcacgcUGGCcGGCAg -3' miRNA: 3'- -CCGCUGCa-UCGCGG-GCGc------ACCG-CCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 60153 | 0.68 | 0.318586 |
Target: 5'- gGGCGAaguacccggccgcCGUgaaGGCGCUCGgccaGUgGGCGGCAa -3' miRNA: 3'- -CCGCU-------------GCA---UCGCGGGCg---CA-CCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 46799 | 0.68 | 0.319321 |
Target: 5'- -aCGACG-AGCGCgCGCucggccGGCGGCAg -3' miRNA: 3'- ccGCUGCaUCGCGgGCGca----CCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 60375 | 0.68 | 0.319321 |
Target: 5'- aGGCGGCGaaGGuCGCCgGCcgcaagaucGUcGGCGGCAu -3' miRNA: 3'- -CCGCUGCa-UC-GCGGgCG---------CA-CCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 17072 | 0.68 | 0.319321 |
Target: 5'- cGGCGccgauaGgcGCGCCCGuCGacGCGGCGg -3' miRNA: 3'- -CCGCug----CauCGCGGGC-GCacCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 2479 | 0.68 | 0.319321 |
Target: 5'- uGCG-CGUGGUGCCgCGCuUGGCGaccaGCAg -3' miRNA: 3'- cCGCuGCAUCGCGG-GCGcACCGC----CGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 24188 | 0.68 | 0.326747 |
Target: 5'- cGGCGA-GUucaCGCCCGa--GGCGGCAg -3' miRNA: 3'- -CCGCUgCAuc-GCGGGCgcaCCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 36464 | 0.68 | 0.326747 |
Target: 5'- uGGCGcAUG-GGCGCgCGCGaGGCuGGCGg -3' miRNA: 3'- -CCGC-UGCaUCGCGgGCGCaCCG-CCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 17568 | 0.68 | 0.326747 |
Target: 5'- cGCGGCGgcGCGCgaagCCGaggagaaGcUGGCGGCGc -3' miRNA: 3'- cCGCUGCauCGCG----GGCg------C-ACCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 10465 | 0.68 | 0.326747 |
Target: 5'- cGGCGAgGUAGCGgCgCGCGcGGUcGCu -3' miRNA: 3'- -CCGCUgCAUCGCgG-GCGCaCCGcCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 10762 | 0.67 | 0.3343 |
Target: 5'- cGGuUGugGUGaucCGCCCGCGccgGGCGcGCGg -3' miRNA: 3'- -CC-GCugCAUc--GCGGGCGCa--CCGC-CGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 40460 | 0.67 | 0.3343 |
Target: 5'- cGGcCGugGUcgAGCGCgUGCucGUGcGCGGCGc -3' miRNA: 3'- -CC-GCugCA--UCGCGgGCG--CAC-CGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 44675 | 0.67 | 0.341206 |
Target: 5'- cGGCGACGcgcccGCGCCCGauccgaaCGUGGCa--- -3' miRNA: 3'- -CCGCUGCau---CGCGGGC-------GCACCGccgu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 47565 | 0.67 | 0.341979 |
Target: 5'- aGGCGACGU--CGCCCGaCGaagcgaaGCGGCu -3' miRNA: 3'- -CCGCUGCAucGCGGGC-GCac-----CGCCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 49373 | 0.67 | 0.341979 |
Target: 5'- cGGCGACGc-GCGCguucaucaCCGCG-GGCGucGCAa -3' miRNA: 3'- -CCGCUGCauCGCG--------GGCGCaCCGC--CGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 43823 | 0.67 | 0.349786 |
Target: 5'- cGGCGACacGGCcgcgggccgGCCgCGCGcGGCGGUg -3' miRNA: 3'- -CCGCUGcaUCG---------CGG-GCGCaCCGCCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 42208 | 0.67 | 0.352944 |
Target: 5'- cGCGAgcuucuugcuguagcCGUAGcCGCCCuCGUuuccaGGCGGCGg -3' miRNA: 3'- cCGCU---------------GCAUC-GCGGGcGCA-----CCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 38545 | 0.67 | 0.357718 |
Target: 5'- aGGCGGCGcAGgaGCCgGCGUuGCGcGCGg -3' miRNA: 3'- -CCGCUGCaUCg-CGGgCGCAcCGC-CGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 30497 | 0.67 | 0.357718 |
Target: 5'- -uCGACGgcuucGGCGCCCgGCGUGcgcgcgauGCGGUAc -3' miRNA: 3'- ccGCUGCa----UCGCGGG-CGCAC--------CGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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