Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23964 | 5' | -62.5 | NC_005262.1 | + | 17685 | 0.66 | 0.407032 |
Target: 5'- cGGgGugGUAGUGCUucagguaCGCG-GcGCGGCc -3' miRNA: 3'- -CCgCugCAUCGCGG-------GCGCaC-CGCCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 26558 | 0.66 | 0.407904 |
Target: 5'- cGGcCGACGcgcuGCGCCaguuCGCGcaggcauacgcUGGCGGCc -3' miRNA: 3'- -CC-GCUGCau--CGCGG----GCGC-----------ACCGCCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 17331 | 0.66 | 0.411403 |
Target: 5'- uGCGuCGUGGCcggcgcggcauucggGUCCgGCGcgGGCGGCGc -3' miRNA: 3'- cCGCuGCAUCG---------------CGGG-CGCa-CCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 52366 | 0.66 | 0.415803 |
Target: 5'- cGCGGCGUgucgcgcaccuucGGCgGCCCgGCGcgGcGCGGCu -3' miRNA: 3'- cCGCUGCA-------------UCG-CGGG-CGCa-C-CGCCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 982 | 0.66 | 0.416687 |
Target: 5'- -cCGA-GUGGCGaCCUGCGgggcggGGCGGUg -3' miRNA: 3'- ccGCUgCAUCGC-GGGCGCa-----CCGCCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 16586 | 0.66 | 0.416687 |
Target: 5'- aGGCG-CGU-GUGCUgGuCGaGGCGGCGa -3' miRNA: 3'- -CCGCuGCAuCGCGGgC-GCaCCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 44704 | 0.66 | 0.420232 |
Target: 5'- uGGUGACGgcGUGgCUgcaucaguucaaggaGCGcGGCGGCGu -3' miRNA: 3'- -CCGCUGCauCGCgGG---------------CGCaCCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 28161 | 0.66 | 0.425584 |
Target: 5'- aGCG-CGcGGCGCaacugCGCGcGGCGGCc -3' miRNA: 3'- cCGCuGCaUCGCGg----GCGCaCCGCCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 51393 | 0.66 | 0.425584 |
Target: 5'- aGGCcGCGccugaccguGUGCaCCGCGUgcucGGCGGCGc -3' miRNA: 3'- -CCGcUGCau-------CGCG-GGCGCA----CCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 58614 | 0.66 | 0.425584 |
Target: 5'- cGGCcGCGcccGCGCCCGCGacGcCGGCc -3' miRNA: 3'- -CCGcUGCau-CGCGGGCGCacC-GCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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