miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 5' -62.5 NC_005262.1 + 3982 0.69 0.252024
Target:  5'- uGauACGUGGCGCCUGCG-GGcCGGUg -3'
miRNA:   3'- cCgcUGCAUCGCGGGCGCaCC-GCCGu -5'
23964 5' -62.5 NC_005262.1 + 60119 0.69 0.252024
Target:  5'- gGGC-ACGagGGCGCCaGCGUcGCGGCGa -3'
miRNA:   3'- -CCGcUGCa-UCGCGGgCGCAcCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 35837 0.69 0.244187
Target:  5'- aGCGGCGUcGGCGCCgCGaccgcccagauguuUGUGcGCGGCGa -3'
miRNA:   3'- cCGCUGCA-UCGCGG-GC--------------GCAC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 51189 0.7 0.240052
Target:  5'- cGGCGAgGgagGGCGCgcucauCCGCGacgccucgccGGCGGCAg -3'
miRNA:   3'- -CCGCUgCa--UCGCG------GGCGCa---------CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 26625 0.7 0.234246
Target:  5'- gGGCaaauCGaAGCGCCCGCGUaGCuGGCGc -3'
miRNA:   3'- -CCGcu--GCaUCGCGGGCGCAcCG-CCGU- -5'
23964 5' -62.5 NC_005262.1 + 11917 0.7 0.234246
Target:  5'- cGGCGGCGUcGGCucggucguGCUCGCGUcguucGCGGCGc -3'
miRNA:   3'- -CCGCUGCA-UCG--------CGGGCGCAc----CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 13532 0.7 0.228559
Target:  5'- cGGCG-CGggcGCGCCCuCGUuGCGGCGg -3'
miRNA:   3'- -CCGCuGCau-CGCGGGcGCAcCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 23373 0.7 0.228559
Target:  5'- cGGCGGCGaAG-GCCCGCaacGUgaagcgccacaaGGCGGCGa -3'
miRNA:   3'- -CCGCUGCaUCgCGGGCG---CA------------CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 17032 0.7 0.222989
Target:  5'- cGCG-CGUcGcCGCCUguacgaccgGCGUGGCGGCGa -3'
miRNA:   3'- cCGCuGCAuC-GCGGG---------CGCACCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 46379 0.7 0.217535
Target:  5'- aGGuCGuccaGCGUGGCGCCCaGCGUcuCGGCAu -3'
miRNA:   3'- -CC-GC----UGCAUCGCGGG-CGCAccGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 8272 0.7 0.217535
Target:  5'- cGGcCGAgGaAGCuGCCCGCGUcgcucgcgaGGCGGCc -3'
miRNA:   3'- -CC-GCUgCaUCG-CGGGCGCA---------CCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 32835 0.7 0.217535
Target:  5'- cGGCGACGUcGGCgacaagguuucgGCCCGCacGuGCGGCGc -3'
miRNA:   3'- -CCGCUGCA-UCG------------CGGGCGcaC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 40746 0.7 0.214317
Target:  5'- gGGCGGCGgcGCGUUCcaaaucaacggcuauGC-UGGCGGCAc -3'
miRNA:   3'- -CCGCUGCauCGCGGG---------------CGcACCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 43447 0.7 0.211667
Target:  5'- cGGCGACGcgcuuGUGCggaucgagucgagCCGCuucGUGGCGGCGa -3'
miRNA:   3'- -CCGCUGCau---CGCG-------------GGCG---CACCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 10485 0.71 0.196848
Target:  5'- cGGCGACcagcagcAGCGCCaGCaUGGCGGCc -3'
miRNA:   3'- -CCGCUGca-----UCGCGGgCGcACCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 42675 0.71 0.191952
Target:  5'- uGCGAgcCGUGGCGCCCGCacGcGUGGCc -3'
miRNA:   3'- cCGCU--GCAUCGCGGGCGcaC-CGCCGu -5'
23964 5' -62.5 NC_005262.1 + 9301 0.71 0.187163
Target:  5'- uGCGacgacaGCGUGGCGCCUGgaaCGaaaaUGGCGGCAg -3'
miRNA:   3'- cCGC------UGCAUCGCGGGC---GC----ACCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 58860 0.71 0.182479
Target:  5'- cGGCGACGUcacgccGGCgcaGCCCGCGcguUGGCuGCu -3'
miRNA:   3'- -CCGCUGCA------UCG---CGGGCGC---ACCGcCGu -5'
23964 5' -62.5 NC_005262.1 + 5049 0.72 0.1779
Target:  5'- cGGCGccugauCGgcgGGCagGCCCGCGgcGGCGGCGc -3'
miRNA:   3'- -CCGCu-----GCa--UCG--CGGGCGCa-CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 17192 0.72 0.173423
Target:  5'- gGGCGGgaucUGUGGCGUCUGCGgcgaGGaCGGCGc -3'
miRNA:   3'- -CCGCU----GCAUCGCGGGCGCa---CC-GCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.