miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 5' -62.5 NC_005262.1 + 29568 0.68 0.304852
Target:  5'- cGGCGcccaugucgaGCGUGuCGCCCgaagccgcgaucGCG-GGCGGCAg -3'
miRNA:   3'- -CCGC----------UGCAUcGCGGG------------CGCaCCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 29777 0.69 0.258192
Target:  5'- -cCGGCGUAGUGCCgGaCG-GcGCGGCAc -3'
miRNA:   3'- ccGCUGCAUCGCGGgC-GCaC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 30388 0.81 0.034635
Target:  5'- cGGCGggaACGUGGCGCCUGCGaccuugagcugGGCGGCGu -3'
miRNA:   3'- -CCGC---UGCAUCGCGGGCGCa----------CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 30497 0.67 0.357718
Target:  5'- -uCGACGgcuucGGCGCCCgGCGUGcgcgcgauGCGGUAc -3'
miRNA:   3'- ccGCUGCa----UCGCGGG-CGCAC--------CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 32128 0.79 0.050911
Target:  5'- aGGCGACGgacauGCGCaCCGCagcgGGCGGCAc -3'
miRNA:   3'- -CCGCUGCau---CGCG-GGCGca--CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 32835 0.7 0.217535
Target:  5'- cGGCGACGUcGGCgacaagguuucgGCCCGCacGuGCGGCGc -3'
miRNA:   3'- -CCGCUGCA-UCG------------CGGGCGcaC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 32881 0.69 0.252024
Target:  5'- cGGCGACGaaguUGGUGCCauccucgaGCGcGaGCGGCGu -3'
miRNA:   3'- -CCGCUGC----AUCGCGGg-------CGCaC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 33184 0.69 0.256948
Target:  5'- cGGCGGCGgcucgaucuucGCGCCCuucaGCGgcuUGGCGGUc -3'
miRNA:   3'- -CCGCUGCau---------CGCGGG----CGC---ACCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 34126 0.66 0.39069
Target:  5'- gGGUugGGCGggcuGCGCgggCGCG-GGCGGCAu -3'
miRNA:   3'- -CCG--CUGCau--CGCGg--GCGCaCCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 34479 0.67 0.365776
Target:  5'- cGGCGuuCG-AGCacaUCCGCGcGGCGGCGc -3'
miRNA:   3'- -CCGCu-GCaUCGc--GGGCGCaCCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 35837 0.69 0.244187
Target:  5'- aGCGGCGUcGGCGCCgCGaccgcccagauguuUGUGcGCGGCGa -3'
miRNA:   3'- cCGCUGCA-UCGCGG-GC--------------GCAC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 36464 0.68 0.326747
Target:  5'- uGGCGcAUG-GGCGCgCGCGaGGCuGGCGg -3'
miRNA:   3'- -CCGC-UGCaUCGCGgGCGCaCCG-CCGU- -5'
23964 5' -62.5 NC_005262.1 + 38545 0.67 0.357718
Target:  5'- aGGCGGCGcAGgaGCCgGCGUuGCGcGCGg -3'
miRNA:   3'- -CCGCUGCaUCg-CGGgCGCAcCGC-CGU- -5'
23964 5' -62.5 NC_005262.1 + 40224 0.74 0.111386
Target:  5'- cGGCGAUcuccuGCGCCCGCGc-GCGGCGg -3'
miRNA:   3'- -CCGCUGcau--CGCGGGCGCacCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 40460 0.67 0.3343
Target:  5'- cGGcCGugGUcgAGCGCgUGCucGUGcGCGGCGc -3'
miRNA:   3'- -CC-GCugCA--UCGCGgGCG--CAC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 40746 0.7 0.214317
Target:  5'- gGGCGGCGgcGCGUUCcaaaucaacggcuauGC-UGGCGGCAc -3'
miRNA:   3'- -CCGCUGCauCGCGGG---------------CGcACCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 41541 0.75 0.094692
Target:  5'- uGGCGACGgcGUgaugcgcaggccgGCCgGCGUGGgCGGCGc -3'
miRNA:   3'- -CCGCUGCauCG-------------CGGgCGCACC-GCCGU- -5'
23964 5' -62.5 NC_005262.1 + 42002 0.68 0.290891
Target:  5'- cGCGACGaa-CGCCCGCcucgaaucgGGCGGCc -3'
miRNA:   3'- cCGCUGCaucGCGGGCGca-------CCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 42191 0.74 0.111386
Target:  5'- gGGCGACGgcGCGCCgaagaugauCGUcGGCGGCAc -3'
miRNA:   3'- -CCGCUGCauCGCGGgc-------GCA-CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 42208 0.67 0.352944
Target:  5'- cGCGAgcuucuugcuguagcCGUAGcCGCCCuCGUuuccaGGCGGCGg -3'
miRNA:   3'- cCGCU---------------GCAUC-GCGGGcGCA-----CCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.