miRNA display CGI


Results 81 - 90 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 5' -62.5 NC_005262.1 + 52614 0.69 0.277437
Target:  5'- gGGCGAgcUGaAGCGCaCCGgcuCGUGGCGcGCGa -3'
miRNA:   3'- -CCGCU--GCaUCGCG-GGC---GCACCGC-CGU- -5'
23964 5' -62.5 NC_005262.1 + 56768 0.67 0.357718
Target:  5'- gGGCGACG-AGCGCUacaugaaGC-UGGcCGGCc -3'
miRNA:   3'- -CCGCUGCaUCGCGGg------CGcACC-GCCGu -5'
23964 5' -62.5 NC_005262.1 + 58458 0.66 0.39069
Target:  5'- aGGCGuGCGcGGCGUCaCGaCGUcGGaCGGCAc -3'
miRNA:   3'- -CCGC-UGCaUCGCGG-GC-GCA-CC-GCCGU- -5'
23964 5' -62.5 NC_005262.1 + 58614 0.66 0.425584
Target:  5'- cGGCcGCGcccGCGCCCGCGacGcCGGCc -3'
miRNA:   3'- -CCGcUGCau-CGCGGGCGCacC-GCCGu -5'
23964 5' -62.5 NC_005262.1 + 58860 0.71 0.182479
Target:  5'- cGGCGACGUcacgccGGCgcaGCCCGCGcguUGGCuGCu -3'
miRNA:   3'- -CCGCUGCA------UCG---CGGGCGC---ACCGcCGu -5'
23964 5' -62.5 NC_005262.1 + 60119 0.69 0.252024
Target:  5'- gGGC-ACGagGGCGCCaGCGUcGCGGCGa -3'
miRNA:   3'- -CCGcUGCa-UCGCGGgCGCAcCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 60153 0.68 0.318586
Target:  5'- gGGCGAaguacccggccgcCGUgaaGGCGCUCGgccaGUgGGCGGCAa -3'
miRNA:   3'- -CCGCU-------------GCA---UCGCGGGCg---CA-CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 60375 0.68 0.319321
Target:  5'- aGGCGGCGaaGGuCGCCgGCcgcaagaucGUcGGCGGCAu -3'
miRNA:   3'- -CCGCUGCa-UC-GCGGgCG---------CA-CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 62319 0.67 0.373958
Target:  5'- aGCGGC--AGCGCCgGCagacgagcgGGCGGCGu -3'
miRNA:   3'- cCGCUGcaUCGCGGgCGca-------CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 62375 0.67 0.357718
Target:  5'- -uCGACGaAGCGgCCGCGgucgUGGCGGa- -3'
miRNA:   3'- ccGCUGCaUCGCgGGCGC----ACCGCCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.