Results 61 - 80 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23964 | 5' | -62.5 | NC_005262.1 | + | 17192 | 0.72 | 0.173423 |
Target: 5'- gGGCGGgaucUGUGGCGUCUGCGgcgaGGaCGGCGc -3' miRNA: 3'- -CCGCU----GCAUCGCGGGCGCa---CC-GCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 17072 | 0.68 | 0.319321 |
Target: 5'- cGGCGccgauaGgcGCGCCCGuCGacGCGGCGg -3' miRNA: 3'- -CCGCug----CauCGCGGGC-GCacCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 17032 | 0.7 | 0.222989 |
Target: 5'- cGCG-CGUcGcCGCCUguacgaccgGCGUGGCGGCGa -3' miRNA: 3'- cCGCuGCAuC-GCGGG---------CGCACCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 16586 | 0.66 | 0.416687 |
Target: 5'- aGGCG-CGU-GUGCUgGuCGaGGCGGCGa -3' miRNA: 3'- -CCGCuGCAuCGCGGgC-GCaCCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 15908 | 0.72 | 0.164769 |
Target: 5'- cGCGACGUGGCG-CCGCGaUGcGCcGCAg -3' miRNA: 3'- cCGCUGCAUCGCgGGCGC-AC-CGcCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 15106 | 0.69 | 0.258192 |
Target: 5'- uGCGGCGcGGCGUCCggcuggaacGCGcUGGCcGGCAg -3' miRNA: 3'- cCGCUGCaUCGCGGG---------CGC-ACCG-CCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 14348 | 0.73 | 0.141095 |
Target: 5'- uGCGACGUGcuuGCGCgCGuCGacUGGCGGCGg -3' miRNA: 3'- cCGCUGCAU---CGCGgGC-GC--ACCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 14287 | 0.67 | 0.365776 |
Target: 5'- cGCGAacUGUAGCGUUgCGUGgacgggagGGCGGCGg -3' miRNA: 3'- cCGCU--GCAUCGCGG-GCGCa-------CCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 13532 | 0.7 | 0.228559 |
Target: 5'- cGGCG-CGggcGCGCCCuCGUuGCGGCGg -3' miRNA: 3'- -CCGCuGCau-CGCGGGcGCAcCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 13171 | 0.66 | 0.405292 |
Target: 5'- cGGCGACauuuccagcaacagGUucagccgaAGCGCUCGCGcuaccggguUGaGCGGCAg -3' miRNA: 3'- -CCGCUG--------------CA--------UCGCGGGCGC---------AC-CGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 12324 | 0.67 | 0.365776 |
Target: 5'- uGCGGCuc-GUGCCgcagCGCGcGGCGGCAg -3' miRNA: 3'- cCGCUGcauCGCGG----GCGCaCCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 11917 | 0.7 | 0.234246 |
Target: 5'- cGGCGGCGUcGGCucggucguGCUCGCGUcguucGCGGCGc -3' miRNA: 3'- -CCGCUGCA-UCG--------CGGGCGCAc----CGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 11874 | 0.66 | 0.39069 |
Target: 5'- cGGCGACGUGuauCGCgCGaaagGUGGCcgcGGCAc -3' miRNA: 3'- -CCGCUGCAUc--GCGgGCg---CACCG---CCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 11647 | 0.68 | 0.312023 |
Target: 5'- cGGCGGCGccGGCGUCgCGCugcacgcUGGCcGGCAg -3' miRNA: 3'- -CCGCUGCa-UCGCGG-GCGc------ACCG-CCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 10814 | 0.67 | 0.369034 |
Target: 5'- cGCGACGaucacgaccAGCGCaugCGCGUccgccgcgcucagggGGCGGCAu -3' miRNA: 3'- cCGCUGCa--------UCGCGg--GCGCA---------------CCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 10762 | 0.67 | 0.3343 |
Target: 5'- cGGuUGugGUGaucCGCCCGCGccgGGCGcGCGg -3' miRNA: 3'- -CC-GCugCAUc--GCGGGCGCa--CCGC-CGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 10485 | 0.71 | 0.196848 |
Target: 5'- cGGCGACcagcagcAGCGCCaGCaUGGCGGCc -3' miRNA: 3'- -CCGCUGca-----UCGCGGgCGcACCGCCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 10465 | 0.68 | 0.326747 |
Target: 5'- cGGCGAgGUAGCGgCgCGCGcGGUcGCu -3' miRNA: 3'- -CCGCUgCAUCGCgG-GCGCaCCGcCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 9432 | 0.66 | 0.39069 |
Target: 5'- cGGCGAgCGgguGCgaaGCCCGCauUGuGCGGCAc -3' miRNA: 3'- -CCGCU-GCau-CG---CGGGCGc-AC-CGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 9301 | 0.71 | 0.187163 |
Target: 5'- uGCGacgacaGCGUGGCGCCUGgaaCGaaaaUGGCGGCAg -3' miRNA: 3'- cCGC------UGCAUCGCGGGC---GC----ACCGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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