miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 5' -62.5 NC_005262.1 + 32128 0.79 0.050911
Target:  5'- aGGCGACGgacauGCGCaCCGCagcgGGCGGCAc -3'
miRNA:   3'- -CCGCUGCau---CGCG-GGCGca--CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 40746 0.7 0.214317
Target:  5'- gGGCGGCGgcGCGUUCcaaaucaacggcuauGC-UGGCGGCAc -3'
miRNA:   3'- -CCGCUGCauCGCGGG---------------CGcACCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 8272 0.7 0.217535
Target:  5'- cGGcCGAgGaAGCuGCCCGCGUcgcucgcgaGGCGGCc -3'
miRNA:   3'- -CC-GCUgCaUCG-CGGGCGCA---------CCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 42002 0.68 0.290891
Target:  5'- cGCGACGaa-CGCCCGCcucgaaucgGGCGGCc -3'
miRNA:   3'- cCGCUGCaucGCGGGCGca-------CCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 50345 0.68 0.284101
Target:  5'- --gGACGaAGCGCCCGCGacgaccgcGaGCGGCGc -3'
miRNA:   3'- ccgCUGCaUCGCGGGCGCa-------C-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 49615 0.69 0.277437
Target:  5'- cGCGACGUcgcuaaccaGGCGCUCG-GUGGCcucgcgaucGGCGg -3'
miRNA:   3'- cCGCUGCA---------UCGCGGGCgCACCG---------CCGU- -5'
23964 5' -62.5 NC_005262.1 + 52614 0.69 0.277437
Target:  5'- gGGCGAgcUGaAGCGCaCCGgcuCGUGGCGcGCGa -3'
miRNA:   3'- -CCGCU--GCaUCGCG-GGC---GCACCGC-CGU- -5'
23964 5' -62.5 NC_005262.1 + 49708 0.69 0.264483
Target:  5'- cGCGACGgcGUGCCgGgCGgcgaaccGGCGGCc -3'
miRNA:   3'- cCGCUGCauCGCGGgC-GCa------CCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 29777 0.69 0.258192
Target:  5'- -cCGGCGUAGUGCCgGaCG-GcGCGGCAc -3'
miRNA:   3'- ccGCUGCAUCGCGGgC-GCaC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 17539 0.69 0.258192
Target:  5'- gGGC-ACGcGGuCGCgCGCGaGGCGGCAg -3'
miRNA:   3'- -CCGcUGCaUC-GCGgGCGCaCCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 60119 0.69 0.252024
Target:  5'- gGGC-ACGagGGCGCCaGCGUcGCGGCGa -3'
miRNA:   3'- -CCGcUGCa-UCGCGGgCGCAcCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 35837 0.69 0.244187
Target:  5'- aGCGGCGUcGGCGCCgCGaccgcccagauguuUGUGcGCGGCGa -3'
miRNA:   3'- cCGCUGCA-UCGCGG-GC--------------GCAC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 26625 0.7 0.234246
Target:  5'- gGGCaaauCGaAGCGCCCGCGUaGCuGGCGc -3'
miRNA:   3'- -CCGcu--GCaUCGCGGGCGCAcCG-CCGU- -5'
23964 5' -62.5 NC_005262.1 + 23373 0.7 0.228559
Target:  5'- cGGCGGCGaAG-GCCCGCaacGUgaagcgccacaaGGCGGCGa -3'
miRNA:   3'- -CCGCUGCaUCgCGGGCG---CA------------CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 32835 0.7 0.217535
Target:  5'- cGGCGACGUcGGCgacaagguuucgGCCCGCacGuGCGGCGc -3'
miRNA:   3'- -CCGCUGCA-UCG------------CGGGCGcaC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 17685 0.66 0.407032
Target:  5'- cGGgGugGUAGUGCUucagguaCGCG-GcGCGGCc -3'
miRNA:   3'- -CCgCugCAUCGCGG-------GCGCaC-CGCCGu -5'
23964 5' -62.5 NC_005262.1 + 17331 0.66 0.411403
Target:  5'- uGCGuCGUGGCcggcgcggcauucggGUCCgGCGcgGGCGGCGc -3'
miRNA:   3'- cCGCuGCAUCG---------------CGGG-CGCa-CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 52366 0.66 0.415803
Target:  5'- cGCGGCGUgucgcgcaccuucGGCgGCCCgGCGcgGcGCGGCu -3'
miRNA:   3'- cCGCUGCA-------------UCG-CGGG-CGCa-C-CGCCGu -5'
23964 5' -62.5 NC_005262.1 + 44704 0.66 0.420232
Target:  5'- uGGUGACGgcGUGgCUgcaucaguucaaggaGCGcGGCGGCGu -3'
miRNA:   3'- -CCGCUGCauCGCgGG---------------CGCaCCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 4093 1.09 0.00025
Target:  5'- cGGCGACGUAGCGCCCGCGUGGCGGCAc -3'
miRNA:   3'- -CCGCUGCAUCGCGGGCGCACCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.