Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23964 | 5' | -62.5 | NC_005262.1 | + | 51675 | 0.66 | 0.39069 |
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Target: 5'- cGCGGCGaucUGCUCGCGcgcacGGCGGCGc -3' miRNA: 3'- cCGCUGCaucGCGGGCGCa----CCGCCGU- -5' |
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| 23964 | 5' | -62.5 | NC_005262.1 | + | 34126 | 0.66 | 0.39069 |
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Target: 5'- gGGUugGGCGggcuGCGCgggCGCG-GGCGGCAu -3' miRNA: 3'- -CCG--CUGCau--CGCGg--GCGCaCCGCCGU- -5' |
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| 23964 | 5' | -62.5 | NC_005262.1 | + | 215 | 0.66 | 0.389842 |
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Target: 5'- gGGCGGCGgAGCcagacacgcuaccGCCgGC--GGCGGCGg -3' miRNA: 3'- -CCGCUGCaUCG-------------CGGgCGcaCCGCCGU- -5' |
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| 23964 | 5' | -62.5 | NC_005262.1 | + | 62319 | 0.67 | 0.373958 |
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Target: 5'- aGCGGC--AGCGCCgGCagacgagcgGGCGGCGu -3' miRNA: 3'- cCGCUGcaUCGCGGgCGca-------CCGCCGU- -5' |
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| 23964 | 5' | -62.5 | NC_005262.1 | + | 21805 | 0.67 | 0.357718 |
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Target: 5'- gGGCGuuCGUcGCGuUCUGCGcGGCGGUg -3' miRNA: 3'- -CCGCu-GCAuCGC-GGGCGCaCCGCCGu -5' |
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| 23964 | 5' | -62.5 | NC_005262.1 | + | 62375 | 0.67 | 0.357718 |
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Target: 5'- -uCGACGaAGCGgCCGCGgucgUGGCGGa- -3' miRNA: 3'- ccGCUGCaUCGCgGGCGC----ACCGCCgu -5' |
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| 23964 | 5' | -62.5 | NC_005262.1 | + | 38545 | 0.67 | 0.357718 |
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Target: 5'- aGGCGGCGcAGgaGCCgGCGUuGCGcGCGg -3' miRNA: 3'- -CCGCUGCaUCg-CGGgCGCAcCGC-CGU- -5' |
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| 23964 | 5' | -62.5 | NC_005262.1 | + | 3293 | 0.67 | 0.357718 |
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Target: 5'- uGGCGGCcu-GCGCCgCGCGgccCGGCGu -3' miRNA: 3'- -CCGCUGcauCGCGG-GCGCaccGCCGU- -5' |
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| 23964 | 5' | -62.5 | NC_005262.1 | + | 30497 | 0.67 | 0.357718 |
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Target: 5'- -uCGACGgcuucGGCGCCCgGCGUGcgcgcgauGCGGUAc -3' miRNA: 3'- ccGCUGCa----UCGCGGG-CGCAC--------CGCCGU- -5' |
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| 23964 | 5' | -62.5 | NC_005262.1 | + | 58614 | 0.66 | 0.425584 |
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Target: 5'- cGGCcGCGcccGCGCCCGCGacGcCGGCc -3' miRNA: 3'- -CCGcUGCau-CGCGGGCGCacC-GCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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