Results 61 - 80 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23964 | 5' | -62.5 | NC_005262.1 | + | 15908 | 0.72 | 0.164769 |
Target: 5'- cGCGACGUGGCG-CCGCGaUGcGCcGCAg -3' miRNA: 3'- cCGCUGCAUCGCgGGCGC-AC-CGcCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 14348 | 0.73 | 0.141095 |
Target: 5'- uGCGACGUGcuuGCGCgCGuCGacUGGCGGCGg -3' miRNA: 3'- cCGCUGCAU---CGCGgGC-GC--ACCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 49615 | 0.69 | 0.277437 |
Target: 5'- cGCGACGUcgcuaaccaGGCGCUCG-GUGGCcucgcgaucGGCGg -3' miRNA: 3'- cCGCUGCA---------UCGCGGGCgCACCG---------CCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 50345 | 0.68 | 0.284101 |
Target: 5'- --gGACGaAGCGCCCGCGacgaccgcGaGCGGCGc -3' miRNA: 3'- ccgCUGCaUCGCGGGCGCa-------C-CGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 42002 | 0.68 | 0.290891 |
Target: 5'- cGCGACGaa-CGCCCGCcucgaaucgGGCGGCc -3' miRNA: 3'- cCGCUGCaucGCGGGCGca-------CCGCCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 10814 | 0.67 | 0.369034 |
Target: 5'- cGCGACGaucacgaccAGCGCaugCGCGUccgccgcgcucagggGGCGGCAu -3' miRNA: 3'- cCGCUGCa--------UCGCGg--GCGCA---------------CCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 34479 | 0.67 | 0.365776 |
Target: 5'- cGGCGuuCG-AGCacaUCCGCGcGGCGGCGc -3' miRNA: 3'- -CCGCu-GCaUCGc--GGGCGCaCCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 14287 | 0.67 | 0.365776 |
Target: 5'- cGCGAacUGUAGCGUUgCGUGgacgggagGGCGGCGg -3' miRNA: 3'- cCGCU--GCAUCGCGG-GCGCa-------CCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 12324 | 0.67 | 0.365776 |
Target: 5'- uGCGGCuc-GUGCCgcagCGCGcGGCGGCAg -3' miRNA: 3'- cCGCUGcauCGCGG----GCGCaCCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 56768 | 0.67 | 0.357718 |
Target: 5'- gGGCGACG-AGCGCUacaugaaGC-UGGcCGGCc -3' miRNA: 3'- -CCGCUGCaUCGCGGg------CGcACC-GCCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 43823 | 0.67 | 0.349786 |
Target: 5'- cGGCGACacGGCcgcgggccgGCCgCGCGcGGCGGUg -3' miRNA: 3'- -CCGCUGcaUCG---------CGG-GCGCaCCGCCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 49373 | 0.67 | 0.341979 |
Target: 5'- cGGCGACGc-GCGCguucaucaCCGCG-GGCGucGCAa -3' miRNA: 3'- -CCGCUGCauCGCG--------GGCGCaCCGC--CGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 47565 | 0.67 | 0.341979 |
Target: 5'- aGGCGACGU--CGCCCGaCGaagcgaaGCGGCu -3' miRNA: 3'- -CCGCUGCAucGCGGGC-GCac-----CGCCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 44675 | 0.67 | 0.341206 |
Target: 5'- cGGCGACGcgcccGCGCCCGauccgaaCGUGGCa--- -3' miRNA: 3'- -CCGCUGCau---CGCGGGC-------GCACCGccgu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 10762 | 0.67 | 0.3343 |
Target: 5'- cGGuUGugGUGaucCGCCCGCGccgGGCGcGCGg -3' miRNA: 3'- -CC-GCugCAUc--GCGGGCGCa--CCGC-CGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 17072 | 0.68 | 0.319321 |
Target: 5'- cGGCGccgauaGgcGCGCCCGuCGacGCGGCGg -3' miRNA: 3'- -CCGCug----CauCGCGGGC-GCacCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 60375 | 0.68 | 0.319321 |
Target: 5'- aGGCGGCGaaGGuCGCCgGCcgcaagaucGUcGGCGGCAu -3' miRNA: 3'- -CCGCUGCa-UC-GCGGgCG---------CA-CCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 2479 | 0.68 | 0.319321 |
Target: 5'- uGCG-CGUGGUGCCgCGCuUGGCGaccaGCAg -3' miRNA: 3'- cCGCuGCAUCGCGG-GCGcACCGC----CGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 60153 | 0.68 | 0.318586 |
Target: 5'- gGGCGAaguacccggccgcCGUgaaGGCGCUCGgccaGUgGGCGGCAa -3' miRNA: 3'- -CCGCU-------------GCA---UCGCGGGCg---CA-CCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 11647 | 0.68 | 0.312023 |
Target: 5'- cGGCGGCGccGGCGUCgCGCugcacgcUGGCcGGCAg -3' miRNA: 3'- -CCGCUGCa-UCGCGG-GCGc------ACCG-CCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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