Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23964 | 5' | -62.5 | NC_005262.1 | + | 50345 | 0.68 | 0.284101 |
Target: 5'- --gGACGaAGCGCCCGCGacgaccgcGaGCGGCGc -3' miRNA: 3'- ccgCUGCaUCGCGGGCGCa-------C-CGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 42002 | 0.68 | 0.290891 |
Target: 5'- cGCGACGaa-CGCCCGCcucgaaucgGGCGGCc -3' miRNA: 3'- cCGCUGCaucGCGGGCGca-------CCGCCGu -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 11647 | 0.68 | 0.312023 |
Target: 5'- cGGCGGCGccGGCGUCgCGCugcacgcUGGCcGGCAg -3' miRNA: 3'- -CCGCUGCa-UCGCGG-GCGc------ACCG-CCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 60153 | 0.68 | 0.318586 |
Target: 5'- gGGCGAaguacccggccgcCGUgaaGGCGCUCGgccaGUgGGCGGCAa -3' miRNA: 3'- -CCGCU-------------GCA---UCGCGGGCg---CA-CCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 2479 | 0.68 | 0.319321 |
Target: 5'- uGCG-CGUGGUGCCgCGCuUGGCGaccaGCAg -3' miRNA: 3'- cCGCuGCAUCGCGG-GCGcACCGC----CGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 60375 | 0.68 | 0.319321 |
Target: 5'- aGGCGGCGaaGGuCGCCgGCcgcaagaucGUcGGCGGCAu -3' miRNA: 3'- -CCGCUGCa-UC-GCGGgCG---------CA-CCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 17072 | 0.68 | 0.319321 |
Target: 5'- cGGCGccgauaGgcGCGCCCGuCGacGCGGCGg -3' miRNA: 3'- -CCGCug----CauCGCGGGC-GCacCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 24188 | 0.68 | 0.326747 |
Target: 5'- cGGCGA-GUucaCGCCCGa--GGCGGCAg -3' miRNA: 3'- -CCGCUgCAuc-GCGGGCgcaCCGCCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 36464 | 0.68 | 0.326747 |
Target: 5'- uGGCGcAUG-GGCGCgCGCGaGGCuGGCGg -3' miRNA: 3'- -CCGC-UGCaUCGCGgGCGCaCCG-CCGU- -5' |
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23964 | 5' | -62.5 | NC_005262.1 | + | 58458 | 0.66 | 0.39069 |
Target: 5'- aGGCGuGCGcGGCGUCaCGaCGUcGGaCGGCAc -3' miRNA: 3'- -CCGC-UGCaUCGCGG-GC-GCA-CC-GCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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