miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 5' -62.5 NC_005262.1 + 23 0.66 0.379759
Target:  5'- gGGCGGCGUcgauggcaugcuccAGUGCCUGCaauGUGccggggaggccGCGGCu -3'
miRNA:   3'- -CCGCUGCA--------------UCGCGGGCG---CAC-----------CGCCGu -5'
23964 5' -62.5 NC_005262.1 + 62319 0.67 0.373958
Target:  5'- aGCGGC--AGCGCCgGCagacgagcgGGCGGCGu -3'
miRNA:   3'- cCGCUGcaUCGCGGgCGca-------CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 10814 0.67 0.369034
Target:  5'- cGCGACGaucacgaccAGCGCaugCGCGUccgccgcgcucagggGGCGGCAu -3'
miRNA:   3'- cCGCUGCa--------UCGCGg--GCGCA---------------CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 12324 0.67 0.365776
Target:  5'- uGCGGCuc-GUGCCgcagCGCGcGGCGGCAg -3'
miRNA:   3'- cCGCUGcauCGCGG----GCGCaCCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 34479 0.67 0.365776
Target:  5'- cGGCGuuCG-AGCacaUCCGCGcGGCGGCGc -3'
miRNA:   3'- -CCGCu-GCaUCGc--GGGCGCaCCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 14287 0.67 0.365776
Target:  5'- cGCGAacUGUAGCGUUgCGUGgacgggagGGCGGCGg -3'
miRNA:   3'- cCGCU--GCAUCGCGG-GCGCa-------CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 56768 0.67 0.357718
Target:  5'- gGGCGACG-AGCGCUacaugaaGC-UGGcCGGCc -3'
miRNA:   3'- -CCGCUGCaUCGCGGg------CGcACC-GCCGu -5'
23964 5' -62.5 NC_005262.1 + 30497 0.67 0.357718
Target:  5'- -uCGACGgcuucGGCGCCCgGCGUGcgcgcgauGCGGUAc -3'
miRNA:   3'- ccGCUGCa----UCGCGGG-CGCAC--------CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 3293 0.67 0.357718
Target:  5'- uGGCGGCcu-GCGCCgCGCGgccCGGCGu -3'
miRNA:   3'- -CCGCUGcauCGCGG-GCGCaccGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 38545 0.67 0.357718
Target:  5'- aGGCGGCGcAGgaGCCgGCGUuGCGcGCGg -3'
miRNA:   3'- -CCGCUGCaUCg-CGGgCGCAcCGC-CGU- -5'
23964 5' -62.5 NC_005262.1 + 62375 0.67 0.357718
Target:  5'- -uCGACGaAGCGgCCGCGgucgUGGCGGa- -3'
miRNA:   3'- ccGCUGCaUCGCgGGCGC----ACCGCCgu -5'
23964 5' -62.5 NC_005262.1 + 21805 0.67 0.357718
Target:  5'- gGGCGuuCGUcGCGuUCUGCGcGGCGGUg -3'
miRNA:   3'- -CCGCu-GCAuCGC-GGGCGCaCCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 42208 0.67 0.352944
Target:  5'- cGCGAgcuucuugcuguagcCGUAGcCGCCCuCGUuuccaGGCGGCGg -3'
miRNA:   3'- cCGCU---------------GCAUC-GCGGGcGCA-----CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 43823 0.67 0.349786
Target:  5'- cGGCGACacGGCcgcgggccgGCCgCGCGcGGCGGUg -3'
miRNA:   3'- -CCGCUGcaUCG---------CGG-GCGCaCCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 47565 0.67 0.341979
Target:  5'- aGGCGACGU--CGCCCGaCGaagcgaaGCGGCu -3'
miRNA:   3'- -CCGCUGCAucGCGGGC-GCac-----CGCCGu -5'
23964 5' -62.5 NC_005262.1 + 49373 0.67 0.341979
Target:  5'- cGGCGACGc-GCGCguucaucaCCGCG-GGCGucGCAa -3'
miRNA:   3'- -CCGCUGCauCGCG--------GGCGCaCCGC--CGU- -5'
23964 5' -62.5 NC_005262.1 + 44675 0.67 0.341206
Target:  5'- cGGCGACGcgcccGCGCCCGauccgaaCGUGGCa--- -3'
miRNA:   3'- -CCGCUGCau---CGCGGGC-------GCACCGccgu -5'
23964 5' -62.5 NC_005262.1 + 10762 0.67 0.3343
Target:  5'- cGGuUGugGUGaucCGCCCGCGccgGGCGcGCGg -3'
miRNA:   3'- -CC-GCugCAUc--GCGGGCGCa--CCGC-CGU- -5'
23964 5' -62.5 NC_005262.1 + 40460 0.67 0.3343
Target:  5'- cGGcCGugGUcgAGCGCgUGCucGUGcGCGGCGc -3'
miRNA:   3'- -CC-GCugCA--UCGCGgGCG--CAC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 17568 0.68 0.326747
Target:  5'- cGCGGCGgcGCGCgaagCCGaggagaaGcUGGCGGCGc -3'
miRNA:   3'- cCGCUGCauCGCG----GGCg------C-ACCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.