miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23965 3' -55.6 NC_005262.1 + 52386 0.66 0.730778
Target:  5'- -cGGcGGCCCGGCGcggCGCggcuuCGGCGUGg -3'
miRNA:   3'- cuUCuUCGGGUCGCa--GCG-----GUCGUACg -5'
23965 3' -55.6 NC_005262.1 + 18174 0.66 0.730778
Target:  5'- cGGGAAGCugucgCCGGUGUCgaGCCAGUAgacgGUg -3'
miRNA:   3'- cUUCUUCG-----GGUCGCAG--CGGUCGUa---CG- -5'
23965 3' -55.6 NC_005262.1 + 16185 0.66 0.730778
Target:  5'- cGAGAAGCCCGGa-UCGUUcuuCAUGCg -3'
miRNA:   3'- cUUCUUCGGGUCgcAGCGGuc-GUACG- -5'
23965 3' -55.6 NC_005262.1 + 33174 0.66 0.730778
Target:  5'- -----uGCCgAGCGUCGgCGGCG-GCu -3'
miRNA:   3'- cuucuuCGGgUCGCAGCgGUCGUaCG- -5'
23965 3' -55.6 NC_005262.1 + 31112 0.66 0.730778
Target:  5'- --uGGAGgCCGGCG--GCCGGCA-GCg -3'
miRNA:   3'- cuuCUUCgGGUCGCagCGGUCGUaCG- -5'
23965 3' -55.6 NC_005262.1 + 30306 0.66 0.730778
Target:  5'- cGAcaAGGCCCagaccgcgAGCGagaugCGCCAGCA-GCa -3'
miRNA:   3'- -CUucUUCGGG--------UCGCa----GCGGUCGUaCG- -5'
23965 3' -55.6 NC_005262.1 + 40329 0.66 0.730778
Target:  5'- -----cGCCCAGCcauucGUCcagGCCGcGCAUGCg -3'
miRNA:   3'- cuucuuCGGGUCG-----CAG---CGGU-CGUACG- -5'
23965 3' -55.6 NC_005262.1 + 53352 0.66 0.72972
Target:  5'- -----cGCCCGGC-UUGCCGagcaucuGCAUGCg -3'
miRNA:   3'- cuucuuCGGGUCGcAGCGGU-------CGUACG- -5'
23965 3' -55.6 NC_005262.1 + 5018 0.66 0.720155
Target:  5'- -cGGcuGCCucCAGCGgcaguugcUCGCCGGCcgGCg -3'
miRNA:   3'- cuUCuuCGG--GUCGC--------AGCGGUCGuaCG- -5'
23965 3' -55.6 NC_005262.1 + 8862 0.66 0.720155
Target:  5'- --uGAAGCgCAGCGacaCGCCcGGCA-GCg -3'
miRNA:   3'- cuuCUUCGgGUCGCa--GCGG-UCGUaCG- -5'
23965 3' -55.6 NC_005262.1 + 28155 0.66 0.720155
Target:  5'- cGAGuAGCCCAuCGccCGCC-GCGUGCc -3'
miRNA:   3'- cUUCuUCGGGUcGCa-GCGGuCGUACG- -5'
23965 3' -55.6 NC_005262.1 + 16793 0.66 0.720155
Target:  5'- cGAuGucGCCCAucuGCGUCGCgCGcCAUGCc -3'
miRNA:   3'- -CUuCuuCGGGU---CGCAGCG-GUcGUACG- -5'
23965 3' -55.6 NC_005262.1 + 53558 0.66 0.719087
Target:  5'- cGAGAugguGCUCGGCG-CGCacgcgcugaccggCAGCAUGUa -3'
miRNA:   3'- cUUCUu---CGGGUCGCaGCG-------------GUCGUACG- -5'
23965 3' -55.6 NC_005262.1 + 33111 0.66 0.709443
Target:  5'- gGAGGcGGUCgAGCGcCGuCCAGCGUccGCu -3'
miRNA:   3'- -CUUCuUCGGgUCGCaGC-GGUCGUA--CG- -5'
23965 3' -55.6 NC_005262.1 + 63048 0.66 0.709443
Target:  5'- ---cAAGUCCAGCaugCGCCGGCAcGUc -3'
miRNA:   3'- cuucUUCGGGUCGca-GCGGUCGUaCG- -5'
23965 3' -55.6 NC_005262.1 + 49740 0.66 0.709443
Target:  5'- --cGAAGCCgCAcCGaCGCCGGCG-GCg -3'
miRNA:   3'- cuuCUUCGG-GUcGCaGCGGUCGUaCG- -5'
23965 3' -55.6 NC_005262.1 + 48627 0.66 0.702979
Target:  5'- aGGAGGAGCCCGGC--CGCuucaaggugcugacgCAGCAggaGCu -3'
miRNA:   3'- -CUUCUUCGGGUCGcaGCG---------------GUCGUa--CG- -5'
23965 3' -55.6 NC_005262.1 + 62 0.66 0.698656
Target:  5'- cGggGAGGCCgCGGC-UCGCgaagaAGUcgGCc -3'
miRNA:   3'- -CuuCUUCGG-GUCGcAGCGg----UCGuaCG- -5'
23965 3' -55.6 NC_005262.1 + 8249 0.66 0.698656
Target:  5'- --cGAAGCCgAGCG-CGCgaaAGCA-GCg -3'
miRNA:   3'- cuuCUUCGGgUCGCaGCGg--UCGUaCG- -5'
23965 3' -55.6 NC_005262.1 + 9719 0.66 0.698656
Target:  5'- cGAGGgcGCCauacGCGUCGUCAagGCGaGCg -3'
miRNA:   3'- -CUUCuuCGGgu--CGCAGCGGU--CGUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.