miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23965 5' -61.9 NC_005262.1 + 19177 0.66 0.40471
Target:  5'- aUGcCUUGCgCGCGGgcuuCUCG-CGCUCg -3'
miRNA:   3'- cAC-GAACGgGCGCCac--GAGCgGCGAG- -5'
23965 5' -61.9 NC_005262.1 + 61968 0.66 0.395892
Target:  5'- aUGCgcaGCCUGCGGcgaGCacaagcacaCGCCGCUCc -3'
miRNA:   3'- cACGaa-CGGGCGCCa--CGa--------GCGGCGAG- -5'
23965 5' -61.9 NC_005262.1 + 16990 0.66 0.395892
Target:  5'- -cGCggGCCUGCacgucGGUcaucgGCUCGCCGC-Cg -3'
miRNA:   3'- caCGaaCGGGCG-----CCA-----CGAGCGGCGaG- -5'
23965 5' -61.9 NC_005262.1 + 27664 0.66 0.370194
Target:  5'- -cGC--GCUgGCGGUGCUCGCCucGC-Cg -3'
miRNA:   3'- caCGaaCGGgCGCCACGAGCGG--CGaG- -5'
23965 5' -61.9 NC_005262.1 + 37181 0.66 0.365193
Target:  5'- -cGCUucgauuUGCCCGCGG-GCUUgcggacguugaugagGCCGC-Ca -3'
miRNA:   3'- caCGA------ACGGGCGCCaCGAG---------------CGGCGaG- -5'
23965 5' -61.9 NC_005262.1 + 7232 0.67 0.353706
Target:  5'- cUGgUUGCCCugGCGGaugaUGCgccccucgCGCUGCUCg -3'
miRNA:   3'- cACgAACGGG--CGCC----ACGa-------GCGGCGAG- -5'
23965 5' -61.9 NC_005262.1 + 54412 0.67 0.34566
Target:  5'- cGUGCgcaaGCUCGCGGagGCgcaggcCGCCGCg- -3'
miRNA:   3'- -CACGaa--CGGGCGCCa-CGa-----GCGGCGag -5'
23965 5' -61.9 NC_005262.1 + 7442 0.67 0.329963
Target:  5'- -cGCgaucUGCUCGCGGgGCaCGCCGCccUCg -3'
miRNA:   3'- caCGa---ACGGGCGCCaCGaGCGGCG--AG- -5'
23965 5' -61.9 NC_005262.1 + 29860 0.67 0.322313
Target:  5'- -cGCUUG-CCGC-GUGCcCGCCGCg- -3'
miRNA:   3'- caCGAACgGGCGcCACGaGCGGCGag -5'
23965 5' -61.9 NC_005262.1 + 7781 0.67 0.322313
Target:  5'- -cGCgaGCCCGCGcauggagaGCUUGCgGCUCu -3'
miRNA:   3'- caCGaaCGGGCGCca------CGAGCGgCGAG- -5'
23965 5' -61.9 NC_005262.1 + 43293 0.67 0.320045
Target:  5'- -cGCgaGCgCCGCgccgauGGUGCgcgcgauuacgcacUCGCCGCUCu -3'
miRNA:   3'- caCGaaCG-GGCG------CCACG--------------AGCGGCGAG- -5'
23965 5' -61.9 NC_005262.1 + 33817 0.67 0.320045
Target:  5'- -gGCgucGUCCGUGGUGCcagauuuggcaccuUCGCCGC-Cg -3'
miRNA:   3'- caCGaa-CGGGCGCCACG--------------AGCGGCGaG- -5'
23965 5' -61.9 NC_005262.1 + 18672 0.68 0.307415
Target:  5'- -cGUUcugGCgCGCGGUGUUCGCgGCa- -3'
miRNA:   3'- caCGAa--CGgGCGCCACGAGCGgCGag -5'
23965 5' -61.9 NC_005262.1 + 21523 0.68 0.300165
Target:  5'- -cGCcggUGCCCGUGccGCUCGUCGC-Cg -3'
miRNA:   3'- caCGa--ACGGGCGCcaCGAGCGGCGaG- -5'
23965 5' -61.9 NC_005262.1 + 59470 0.68 0.293048
Target:  5'- -gGacgGCCCGCGaG-GCUCGCCGUagUCg -3'
miRNA:   3'- caCgaaCGGGCGC-CaCGAGCGGCG--AG- -5'
23965 5' -61.9 NC_005262.1 + 43215 0.68 0.286064
Target:  5'- -gGCgcGCCgCGCGcUGCUCGCCgggcuGCUCg -3'
miRNA:   3'- caCGaaCGG-GCGCcACGAGCGG-----CGAG- -5'
23965 5' -61.9 NC_005262.1 + 14412 0.68 0.279211
Target:  5'- uUGCgacGCCCGCGGUGaugaaCGCgCGCgUCg -3'
miRNA:   3'- cACGaa-CGGGCGCCACga---GCG-GCG-AG- -5'
23965 5' -61.9 NC_005262.1 + 5086 0.68 0.27249
Target:  5'- cGUGCgaccgGCUCgGCGGUGCgCGCCcgGUUCa -3'
miRNA:   3'- -CACGaa---CGGG-CGCCACGaGCGG--CGAG- -5'
23965 5' -61.9 NC_005262.1 + 35995 0.69 0.259439
Target:  5'- cGUGCguuccacgUGCCgCGCGaGUGC-CGUCGCaUCa -3'
miRNA:   3'- -CACGa-------ACGG-GCGC-CACGaGCGGCG-AG- -5'
23965 5' -61.9 NC_005262.1 + 19971 0.69 0.259439
Target:  5'- -cGCggccgGCCCGCGGccGUgUCGCCGCg- -3'
miRNA:   3'- caCGaa---CGGGCGCCa-CG-AGCGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.