miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23966 3' -50.1 NC_005262.1 + 52770 0.66 0.96084
Target:  5'- uGCgCGCGGUcuUGCGcgACA--GCCGCc -3'
miRNA:   3'- gUG-GCGCCA--ACGCaaUGUauUGGUGu -5'
23966 3' -50.1 NC_005262.1 + 32053 0.66 0.96084
Target:  5'- gACCGUGcGcUUGCGcgACAUgcGACCGCc -3'
miRNA:   3'- gUGGCGC-C-AACGCaaUGUA--UUGGUGu -5'
23966 3' -50.1 NC_005262.1 + 54691 0.66 0.96084
Target:  5'- cCGCUGCGGUUcaGCGUUcCcgAGCCuuuCGg -3'
miRNA:   3'- -GUGGCGCCAA--CGCAAuGuaUUGGu--GU- -5'
23966 3' -50.1 NC_005262.1 + 5071 0.66 0.952476
Target:  5'- -cCCGCGGcgGCGgcGCGUgcGACCGg- -3'
miRNA:   3'- guGGCGCCaaCGCaaUGUA--UUGGUgu -5'
23966 3' -50.1 NC_005262.1 + 46245 0.66 0.942989
Target:  5'- cCGCCGCGGcUGCcgccucgcGCGcGACCGCGu -3'
miRNA:   3'- -GUGGCGCCaACGcaa-----UGUaUUGGUGU- -5'
23966 3' -50.1 NC_005262.1 + 1704 0.67 0.937814
Target:  5'- uGCCGCGGcgGCGacGCAUGaggucgagaaGCUACGc -3'
miRNA:   3'- gUGGCGCCaaCGCaaUGUAU----------UGGUGU- -5'
23966 3' -50.1 NC_005262.1 + 53252 0.67 0.932348
Target:  5'- gCGCgGcCGGUcGCGUcgGCAUAGCCGu- -3'
miRNA:   3'- -GUGgC-GCCAaCGCAa-UGUAUUGGUgu -5'
23966 3' -50.1 NC_005262.1 + 34005 0.67 0.920537
Target:  5'- gGgCGCGGacgGCGUgacGCcgGGCCGCAu -3'
miRNA:   3'- gUgGCGCCaa-CGCAa--UGuaUUGGUGU- -5'
23966 3' -50.1 NC_005262.1 + 59027 0.67 0.920537
Target:  5'- aGCCGCGG-UGCaGgacaACAUGaACCGCGu -3'
miRNA:   3'- gUGGCGCCaACG-Caa--UGUAU-UGGUGU- -5'
23966 3' -50.1 NC_005262.1 + 15896 0.67 0.914192
Target:  5'- cCGCCGCGugcGCGcgACGUGgcGCCGCGa -3'
miRNA:   3'- -GUGGCGCcaaCGCaaUGUAU--UGGUGU- -5'
23966 3' -50.1 NC_005262.1 + 41448 0.68 0.900633
Target:  5'- gCGgCGCGGcuacCGUUACGcUGACCGCAg -3'
miRNA:   3'- -GUgGCGCCaac-GCAAUGU-AUUGGUGU- -5'
23966 3' -50.1 NC_005262.1 + 49735 0.68 0.900633
Target:  5'- aCACgGCGGcgGCGUUG---GGCCACu -3'
miRNA:   3'- -GUGgCGCCaaCGCAAUguaUUGGUGu -5'
23966 3' -50.1 NC_005262.1 + 47571 0.69 0.870138
Target:  5'- uUAUCGUGG-UGCGaUUAUcUAACCGCAu -3'
miRNA:   3'- -GUGGCGCCaACGC-AAUGuAUUGGUGU- -5'
23966 3' -50.1 NC_005262.1 + 62385 0.69 0.861844
Target:  5'- gGCCGCGGUcgugGCGgauCAUcagcgcaagGGCCGCGa -3'
miRNA:   3'- gUGGCGCCAa---CGCaauGUA---------UUGGUGU- -5'
23966 3' -50.1 NC_005262.1 + 20601 0.69 0.83547
Target:  5'- gCGCCGCaGGgc-UGUUGCGUAGCCAa- -3'
miRNA:   3'- -GUGGCG-CCaacGCAAUGUAUUGGUgu -5'
23966 3' -50.1 NC_005262.1 + 43739 0.7 0.826213
Target:  5'- aACCGCGaucgUGCGcgUGC-UGACCACGa -3'
miRNA:   3'- gUGGCGCca--ACGCa-AUGuAUUGGUGU- -5'
23966 3' -50.1 NC_005262.1 + 34137 0.7 0.816739
Target:  5'- gCugCGCGGgcGCGggcgGCAU-GCCGCu -3'
miRNA:   3'- -GugGCGCCaaCGCaa--UGUAuUGGUGu -5'
23966 3' -50.1 NC_005262.1 + 62294 0.7 0.80706
Target:  5'- aGCCGCGGgcGCGgcUugGUGuuuGCCAUAg -3'
miRNA:   3'- gUGGCGCCaaCGCa-AugUAU---UGGUGU- -5'
23966 3' -50.1 NC_005262.1 + 51470 0.72 0.723633
Target:  5'- cCGCCGCGcGcUGCGgcACG-AGCCGCAu -3'
miRNA:   3'- -GUGGCGC-CaACGCaaUGUaUUGGUGU- -5'
23966 3' -50.1 NC_005262.1 + 22341 0.72 0.690412
Target:  5'- gGCUGCGGUcaGCGUaACGgUAGCCGCGc -3'
miRNA:   3'- gUGGCGCCAa-CGCAaUGU-AUUGGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.