miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23967 3' -59.4 NC_005262.1 + 62793 0.66 0.552785
Target:  5'- uCGGCGAcaAGCUCuacaCCGCC-CCGcCCGc -3'
miRNA:   3'- -GCCGUU--UCGAGc---GGCGGaGGCuGGUc -5'
23967 3' -59.4 NC_005262.1 + 2723 0.66 0.552785
Target:  5'- gCGGUAgcGCUCGCCcugcGCCUCgaGGucCCGGa -3'
miRNA:   3'- -GCCGUuuCGAGCGG----CGGAGg-CU--GGUC- -5'
23967 3' -59.4 NC_005262.1 + 42936 0.66 0.552785
Target:  5'- cCGGCGc-GCgCGUCGUaaCCGACCAGc -3'
miRNA:   3'- -GCCGUuuCGaGCGGCGgaGGCUGGUC- -5'
23967 3' -59.4 NC_005262.1 + 9946 0.66 0.552785
Target:  5'- aGcGCGAucuGCUUGCCGuCCgcgCCGcGCCGGu -3'
miRNA:   3'- gC-CGUUu--CGAGCGGC-GGa--GGC-UGGUC- -5'
23967 3' -59.4 NC_005262.1 + 6284 0.66 0.552785
Target:  5'- -aGCAGcucGGCcuUCGCCGCCUucuugcgcucgCCGGCCGc -3'
miRNA:   3'- gcCGUU---UCG--AGCGGCGGA-----------GGCUGGUc -5'
23967 3' -59.4 NC_005262.1 + 17651 0.66 0.552785
Target:  5'- aGGCAGAGaUCGcCCGCCagcgcgCCGAgCUGGa -3'
miRNA:   3'- gCCGUUUCgAGC-GGCGGa-----GGCU-GGUC- -5'
23967 3' -59.4 NC_005262.1 + 51521 0.66 0.543469
Target:  5'- -aGCucGGCUCGCCgGCCgcgaucgacaggugcCCGACCAu -3'
miRNA:   3'- gcCGuuUCGAGCGG-CGGa--------------GGCUGGUc -5'
23967 3' -59.4 NC_005262.1 + 27959 0.66 0.532154
Target:  5'- gGGCGGucgcGGCgccgaCGCCG-CUCCGGCCc- -3'
miRNA:   3'- gCCGUU----UCGa----GCGGCgGAGGCUGGuc -5'
23967 3' -59.4 NC_005262.1 + 51267 0.66 0.52806
Target:  5'- aCGGCAAgcugaaccucaccGGC-CGCCGgCUgcugcgcaugccgcUCGACCAGa -3'
miRNA:   3'- -GCCGUU-------------UCGaGCGGCgGA--------------GGCUGGUC- -5'
23967 3' -59.4 NC_005262.1 + 55787 0.66 0.521942
Target:  5'- cCGG-AGGGCcuUUGCCGCCUCCGGa--- -3'
miRNA:   3'- -GCCgUUUCG--AGCGGCGGAGGCUgguc -5'
23967 3' -59.4 NC_005262.1 + 57151 0.66 0.521942
Target:  5'- aCGGCGAcGCgaucgaagCGCCGCCgcacaUCGAauuCCAGg -3'
miRNA:   3'- -GCCGUUuCGa-------GCGGCGGa----GGCU---GGUC- -5'
23967 3' -59.4 NC_005262.1 + 53496 0.66 0.511807
Target:  5'- aCGGcCGAAGUgcagaCGCCGCaggggCCGGcCCAGa -3'
miRNA:   3'- -GCC-GUUUCGa----GCGGCGga---GGCU-GGUC- -5'
23967 3' -59.4 NC_005262.1 + 35531 0.67 0.505765
Target:  5'- uGGCAGGGCUucggccaagccgcgaUGUCGCUcgCCGGCgCGGg -3'
miRNA:   3'- gCCGUUUCGA---------------GCGGCGGa-GGCUG-GUC- -5'
23967 3' -59.4 NC_005262.1 + 46991 0.67 0.501754
Target:  5'- uCGuGCAggaacuccauGAGCUCGCCGuCCgggCUGAUCAu -3'
miRNA:   3'- -GC-CGU----------UUCGAGCGGC-GGa--GGCUGGUc -5'
23967 3' -59.4 NC_005262.1 + 10837 0.67 0.501754
Target:  5'- cCGGCucGAGCaccUUGCCGCCggCGAagcCCAGg -3'
miRNA:   3'- -GCCGu-UUCG---AGCGGCGGagGCU---GGUC- -5'
23967 3' -59.4 NC_005262.1 + 29879 0.67 0.501754
Target:  5'- gCGaGCucGAGCacCGCCGCUaCCGAUCGGg -3'
miRNA:   3'- -GC-CGu-UUCGa-GCGGCGGaGGCUGGUC- -5'
23967 3' -59.4 NC_005262.1 + 44115 0.67 0.500754
Target:  5'- gGGCGAAagagcgcaucggcGUUC-CCGCgUUCCGGCCGGa -3'
miRNA:   3'- gCCGUUU-------------CGAGcGGCG-GAGGCUGGUC- -5'
23967 3' -59.4 NC_005262.1 + 38456 0.67 0.491789
Target:  5'- aCGGCAc-GCUCGUCGCCguaUCCuACgAGa -3'
miRNA:   3'- -GCCGUuuCGAGCGGCGG---AGGcUGgUC- -5'
23967 3' -59.4 NC_005262.1 + 60153 0.67 0.491789
Target:  5'- gGGCGAAGUacccgGCCGCCgugaaggcgCuCGGCCAGu -3'
miRNA:   3'- gCCGUUUCGag---CGGCGGa--------G-GCUGGUC- -5'
23967 3' -59.4 NC_005262.1 + 62526 0.67 0.491789
Target:  5'- uGGCGAAaaUCGCCgGCCUuuGGgCGGu -3'
miRNA:   3'- gCCGUUUcgAGCGG-CGGAggCUgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.