miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23967 5' -54.6 NC_005262.1 + 49477 0.66 0.785483
Target:  5'- cGCCGCCCA---GCuCGGCGGUUc--- -3'
miRNA:   3'- uUGGCGGGUuucCG-GCCGCUAAaagc -5'
23967 5' -54.6 NC_005262.1 + 49813 0.66 0.77549
Target:  5'- -uCCgGCCCGAucGGCCGcGCGAUggagCGc -3'
miRNA:   3'- uuGG-CGGGUUu-CCGGC-CGCUAaaa-GC- -5'
23967 5' -54.6 NC_005262.1 + 12513 0.66 0.77549
Target:  5'- cAugCGCagcagCCGgcGGCCGGUGAggUUCa -3'
miRNA:   3'- -UugGCG-----GGUuuCCGGCCGCUaaAAGc -5'
23967 5' -54.6 NC_005262.1 + 48019 0.66 0.772462
Target:  5'- uGCCGCCgAAGaugaggaagucgccGGCCGGCaGGUgcUUCGu -3'
miRNA:   3'- uUGGCGGgUUU--------------CCGGCCG-CUAa-AAGC- -5'
23967 5' -54.6 NC_005262.1 + 14148 0.66 0.765348
Target:  5'- cGCCGCCUugcAGGCCGcCGAUcg-CGa -3'
miRNA:   3'- uUGGCGGGuu-UCCGGCcGCUAaaaGC- -5'
23967 5' -54.6 NC_005262.1 + 23092 0.66 0.765348
Target:  5'- cGCCGCCguAuuauGGCCGuGCGAgugUCc -3'
miRNA:   3'- uUGGCGGguUu---CCGGC-CGCUaaaAGc -5'
23967 5' -54.6 NC_005262.1 + 52722 0.66 0.755068
Target:  5'- gGGCCGCCCuuuGGCCgcucgggcucaGGCGAcgcugCGg -3'
miRNA:   3'- -UUGGCGGGuuuCCGG-----------CCGCUaaaa-GC- -5'
23967 5' -54.6 NC_005262.1 + 13962 0.66 0.755068
Target:  5'- gAGCCGCUgGugcaccagGGGGCCGGUGGg---CGa -3'
miRNA:   3'- -UUGGCGGgU--------UUCCGGCCGCUaaaaGC- -5'
23967 5' -54.6 NC_005262.1 + 30134 0.66 0.755068
Target:  5'- uGCCGCugcuggucgCCGAAGcGCCGGCGGa----- -3'
miRNA:   3'- uUGGCG---------GGUUUC-CGGCCGCUaaaagc -5'
23967 5' -54.6 NC_005262.1 + 52026 0.66 0.755068
Target:  5'- gAGCgCGCCCAGgucGGGCCGcGCcaguugUUCGa -3'
miRNA:   3'- -UUG-GCGGGUU---UCCGGC-CGcuaa--AAGC- -5'
23967 5' -54.6 NC_005262.1 + 49079 0.67 0.73414
Target:  5'- cGCUGCCCGAgcAGGCCGuuaCGAUgg-CGc -3'
miRNA:   3'- uUGGCGGGUU--UCCGGCc--GCUAaaaGC- -5'
23967 5' -54.6 NC_005262.1 + 23678 0.67 0.730963
Target:  5'- uGCCGCCCGAGcGGCgcgugugggucuacCGGCGcacggUCGa -3'
miRNA:   3'- uUGGCGGGUUU-CCG--------------GCCGCuaaa-AGC- -5'
23967 5' -54.6 NC_005262.1 + 35853 0.67 0.723516
Target:  5'- cGACCGCCCAGAuguuuGuGCgCGGCGAcgcgCGc -3'
miRNA:   3'- -UUGGCGGGUUU-----C-CG-GCCGCUaaaaGC- -5'
23967 5' -54.6 NC_005262.1 + 53713 0.67 0.723516
Target:  5'- cGGCCGCgUCGAAGGCCguGGCGc---UCGa -3'
miRNA:   3'- -UUGGCG-GGUUUCCGG--CCGCuaaaAGC- -5'
23967 5' -54.6 NC_005262.1 + 33891 0.67 0.7128
Target:  5'- cGAUCGUgCGucGGCCGGCGGcccgaUCGg -3'
miRNA:   3'- -UUGGCGgGUuuCCGGCCGCUaaa--AGC- -5'
23967 5' -54.6 NC_005262.1 + 29770 0.67 0.7128
Target:  5'- cAACCGCCCGGcguAGuGCCGGaCGGcg--CGg -3'
miRNA:   3'- -UUGGCGGGUU---UC-CGGCC-GCUaaaaGC- -5'
23967 5' -54.6 NC_005262.1 + 44527 0.67 0.702005
Target:  5'- aGACCGUCagaacccuGGCCGGCGAcuacaUCGa -3'
miRNA:   3'- -UUGGCGGguuu----CCGGCCGCUaaa--AGC- -5'
23967 5' -54.6 NC_005262.1 + 33567 0.67 0.702005
Target:  5'- cGACgaGCUC-GAGGCCGGCGAga-UCa -3'
miRNA:   3'- -UUGg-CGGGuUUCCGGCCGCUaaaAGc -5'
23967 5' -54.6 NC_005262.1 + 59503 0.67 0.702005
Target:  5'- uGCCGCUgAAGGGCgaCGGCGAg----- -3'
miRNA:   3'- uUGGCGGgUUUCCG--GCCGCUaaaagc -5'
23967 5' -54.6 NC_005262.1 + 2893 0.67 0.702005
Target:  5'- uAUCGCCUucgaucAGGCUGGUGAggUUCa -3'
miRNA:   3'- uUGGCGGGuu----UCCGGCCGCUaaAAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.