miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23967 5' -54.6 NC_005262.1 + 58903 0.67 0.69114
Target:  5'- cGCUGCgCGAucAGGCCGGCGGc----- -3'
miRNA:   3'- uUGGCGgGUU--UCCGGCCGCUaaaagc -5'
23967 5' -54.6 NC_005262.1 + 60198 0.68 0.669251
Target:  5'- cAACCGgCaaggaGccGGCCGGCGAgg-UCGg -3'
miRNA:   3'- -UUGGCgGg----UuuCCGGCCGCUaaaAGC- -5'
23967 5' -54.6 NC_005262.1 + 25447 0.68 0.669251
Target:  5'- cAACCuGCCCGAGGcGCUGcGCGAgg--CGa -3'
miRNA:   3'- -UUGG-CGGGUUUC-CGGC-CGCUaaaaGC- -5'
23967 5' -54.6 NC_005262.1 + 53511 0.68 0.658249
Target:  5'- --aCGCCgCAGGGGCCGGCccaGAUaaacgaguaUUUCGc -3'
miRNA:   3'- uugGCGG-GUUUCCGGCCG---CUA---------AAAGC- -5'
23967 5' -54.6 NC_005262.1 + 55928 0.68 0.658249
Target:  5'- cGACCGUCCGgcgaucGAGGgCGGCGGccgUCa -3'
miRNA:   3'- -UUGGCGGGU------UUCCgGCCGCUaaaAGc -5'
23967 5' -54.6 NC_005262.1 + 4830 0.68 0.636181
Target:  5'- aGGCCGCCgGc-GGCCGGCugg-UUCGa -3'
miRNA:   3'- -UUGGCGGgUuuCCGGCCGcuaaAAGC- -5'
23967 5' -54.6 NC_005262.1 + 22239 0.68 0.625136
Target:  5'- cGCCGCCCAcgccGGCCGGCc------- -3'
miRNA:   3'- uUGGCGGGUuu--CCGGCCGcuaaaagc -5'
23967 5' -54.6 NC_005262.1 + 21715 0.68 0.625136
Target:  5'- aGAUCGUCuCGAucuGGCCGGCGGgaaUCGu -3'
miRNA:   3'- -UUGGCGG-GUUu--CCGGCCGCUaaaAGC- -5'
23967 5' -54.6 NC_005262.1 + 19231 0.68 0.625136
Target:  5'- uGACUGCCUgcguAucGGCCGGCGAg----- -3'
miRNA:   3'- -UUGGCGGG----UuuCCGGCCGCUaaaagc -5'
23967 5' -54.6 NC_005262.1 + 6998 0.69 0.614098
Target:  5'- cAGCCGCUCGAcgucggccuucAGGCCGGCcAgcUUCa -3'
miRNA:   3'- -UUGGCGGGUU-----------UCCGGCCGcUaaAAGc -5'
23967 5' -54.6 NC_005262.1 + 37876 0.69 0.614098
Target:  5'- cGGCgCGCCCGGAGGCacgGGCGGg----- -3'
miRNA:   3'- -UUG-GCGGGUUUCCGg--CCGCUaaaagc -5'
23967 5' -54.6 NC_005262.1 + 24956 0.69 0.603075
Target:  5'- cGGCgCGCCCAGcuucaggaacAGGCCGGCuugg-UCGa -3'
miRNA:   3'- -UUG-GCGGGUU----------UCCGGCCGcuaaaAGC- -5'
23967 5' -54.6 NC_005262.1 + 21621 0.69 0.592078
Target:  5'- uGACUGCCCGGAGuGCgaCGGCGAcgg-CGa -3'
miRNA:   3'- -UUGGCGGGUUUC-CG--GCCGCUaaaaGC- -5'
23967 5' -54.6 NC_005262.1 + 3233 0.69 0.559324
Target:  5'- aGACCGCgCCGAGcGCCGGCGucag-CGu -3'
miRNA:   3'- -UUGGCG-GGUUUcCGGCCGCuaaaaGC- -5'
23967 5' -54.6 NC_005262.1 + 15308 0.7 0.527096
Target:  5'- cGCCGCgCAuGGGCgGGCGGccgUCGa -3'
miRNA:   3'- uUGGCGgGUuUCCGgCCGCUaaaAGC- -5'
23967 5' -54.6 NC_005262.1 + 4342 0.7 0.505999
Target:  5'- gGGCCGUCCAucGGCCGucGCGA---UCGu -3'
miRNA:   3'- -UUGGCGGGUuuCCGGC--CGCUaaaAGC- -5'
23967 5' -54.6 NC_005262.1 + 31262 0.71 0.485273
Target:  5'- gAGCCGCCCGAAGGCgGcccguccggucaGCGGUUagcugugcuucUUCGc -3'
miRNA:   3'- -UUGGCGGGUUUCCGgC------------CGCUAA-----------AAGC- -5'
23967 5' -54.6 NC_005262.1 + 3407 0.71 0.485273
Target:  5'- uGCCGCCgaCGAucuugcGGCCGGCGAccUUCGc -3'
miRNA:   3'- uUGGCGG--GUUu-----CCGGCCGCUaaAAGC- -5'
23967 5' -54.6 NC_005262.1 + 3621 0.73 0.37956
Target:  5'- uGCCGCCCAcuGGCCGaGCGcc-UUCa -3'
miRNA:   3'- uUGGCGGGUuuCCGGC-CGCuaaAAGc -5'
23967 5' -54.6 NC_005262.1 + 32720 0.73 0.345124
Target:  5'- cGGCuCGCCCuucAGGUCGGCGAgcgcgUCGg -3'
miRNA:   3'- -UUG-GCGGGuu-UCCGGCCGCUaaa--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.