miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23968 3' -51.8 NC_005262.1 + 29050 0.66 0.930552
Target:  5'- gCCGGcacgACGCGcacCGUGUUCGGCUcGAc -3'
miRNA:   3'- -GGUCca--UGUGCa--GCAUAAGCCGGaCU- -5'
23968 3' -51.8 NC_005262.1 + 24007 0.66 0.92486
Target:  5'- gCAGGUucaacccgagauACGCGUCGggauggUCGGCUg-- -3'
miRNA:   3'- gGUCCA------------UGUGCAGCaua---AGCCGGacu -5'
23968 3' -51.8 NC_005262.1 + 16991 0.66 0.912643
Target:  5'- gCGGGccUGCACGUCGgucaUCGGCUc-- -3'
miRNA:   3'- gGUCC--AUGUGCAGCaua-AGCCGGacu -5'
23968 3' -51.8 NC_005262.1 + 50434 0.67 0.895121
Target:  5'- gCCGcGUGCACGUCGUcgUgccgcgcgaggaggaCGGCCg-- -3'
miRNA:   3'- -GGUcCAUGUGCAGCAuaA---------------GCCGGacu -5'
23968 3' -51.8 NC_005262.1 + 34749 0.68 0.853086
Target:  5'- aCAcGGUGCGCGUCGUGc-CGGCg--- -3'
miRNA:   3'- gGU-CCAUGUGCAGCAUaaGCCGgacu -5'
23968 3' -51.8 NC_005262.1 + 6085 0.68 0.826736
Target:  5'- --cGGcGCGCGUCGUGg-CGGCCUa- -3'
miRNA:   3'- gguCCaUGUGCAGCAUaaGCCGGAcu -5'
23968 3' -51.8 NC_005262.1 + 32730 0.7 0.768771
Target:  5'- uUCAGGUcggcgaGCGCGUCGgcgUCGGUCa-- -3'
miRNA:   3'- -GGUCCA------UGUGCAGCauaAGCCGGacu -5'
23968 3' -51.8 NC_005262.1 + 13039 0.7 0.748201
Target:  5'- aCGcGGUGCGCGUCGagcugCGGCCg-- -3'
miRNA:   3'- gGU-CCAUGUGCAGCauaa-GCCGGacu -5'
23968 3' -51.8 NC_005262.1 + 45210 0.71 0.673083
Target:  5'- gCAGGcgGCAUGUCcgccgggcUCGGCCUGAa -3'
miRNA:   3'- gGUCCa-UGUGCAGcaua----AGCCGGACU- -5'
23968 3' -51.8 NC_005262.1 + 737 0.72 0.651103
Target:  5'- gCAGGUAUGCGUCGgaa-CGGUCgUGAa -3'
miRNA:   3'- gGUCCAUGUGCAGCauaaGCCGG-ACU- -5'
23968 3' -51.8 NC_005262.1 + 9419 0.73 0.552449
Target:  5'- aCAGGUACGCGUCGgacgUCuGCCa-- -3'
miRNA:   3'- gGUCCAUGUGCAGCaua-AGcCGGacu -5'
23968 3' -51.8 NC_005262.1 + 806 1.11 0.002321
Target:  5'- uCCAGGUACACGUCGUAUUCGGCCUGAu -3'
miRNA:   3'- -GGUCCAUGUGCAGCAUAAGCCGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.