miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23968 5' -59.1 NC_005262.1 + 23945 0.67 0.491942
Target:  5'- gGUCcagcaaGCuCGGcGAGUGugGCGCGCAGu -3'
miRNA:   3'- aCAGc-----CG-GCC-UUCGCugCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 54409 0.67 0.491942
Target:  5'- cGUCGuGCgcaagcucgCGGAGGCGcaggccgccGCGCGCGCc-- -3'
miRNA:   3'- aCAGC-CG---------GCCUUCGC---------UGCGCGCGuuu -5'
23968 5' -59.1 NC_005262.1 + 50833 0.67 0.49094
Target:  5'- cGUCGacgccgaGCCGGucGGCGAUGCcgucGCGCAc- -3'
miRNA:   3'- aCAGC-------CGGCCu-UCGCUGCG----CGCGUuu -5'
23968 5' -59.1 NC_005262.1 + 30855 0.67 0.481958
Target:  5'- uUGcCGGUCGGAgcgaucgugaaGGCGcuggcgagcgucGCGCGUGCGAc -3'
miRNA:   3'- -ACaGCCGGCCU-----------UCGC------------UGCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 63114 0.67 0.481958
Target:  5'- -cUC-GCC-GAGGUGACGUGCGCGGAc -3'
miRNA:   3'- acAGcCGGcCUUCGCUGCGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 9298 0.67 0.481958
Target:  5'- aUGUCGGUCGGGcccAGCGGCuucggcugcaccGCGaGCAGc -3'
miRNA:   3'- -ACAGCCGGCCU---UCGCUG------------CGCgCGUUu -5'
23968 5' -59.1 NC_005262.1 + 51509 0.67 0.472072
Target:  5'- -aUCGGCCGcaacGGCGAgacgacCGUGCGCAAc -3'
miRNA:   3'- acAGCCGGCcu--UCGCU------GCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 58915 0.67 0.472072
Target:  5'- ---aGGCCGGcGGCccgaccgauGGCGCGCGCu-- -3'
miRNA:   3'- acagCCGGCCuUCG---------CUGCGCGCGuuu -5'
23968 5' -59.1 NC_005262.1 + 63685 0.67 0.472072
Target:  5'- gGUCGgucGCCGGccGGUGACaUGCGCAGAa -3'
miRNA:   3'- aCAGC---CGGCCu-UCGCUGcGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 5173 0.67 0.462291
Target:  5'- gUGaCGGCCGGcgucgcGGGCG-CGgGCGCGGc -3'
miRNA:   3'- -ACaGCCGGCC------UUCGCuGCgCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 19664 0.67 0.462291
Target:  5'- cGUcCGGCCGGAAcGCGggaACGCcgauGCGCu-- -3'
miRNA:   3'- aCA-GCCGGCCUU-CGC---UGCG----CGCGuuu -5'
23968 5' -59.1 NC_005262.1 + 14032 0.67 0.462291
Target:  5'- aG-CGGCCGG-AGCcucgGGCGCGgGCGc- -3'
miRNA:   3'- aCaGCCGGCCuUCG----CUGCGCgCGUuu -5'
23968 5' -59.1 NC_005262.1 + 33268 0.67 0.462291
Target:  5'- cUGUCGauCCGcGAGGCGuaccgcauCGCGCGCAc- -3'
miRNA:   3'- -ACAGCc-GGC-CUUCGCu-------GCGCGCGUuu -5'
23968 5' -59.1 NC_005262.1 + 56340 0.67 0.462291
Target:  5'- cGUCuGGUCGaGGGCGGCGUGCcccGCGAGc -3'
miRNA:   3'- aCAG-CCGGCcUUCGCUGCGCG---CGUUU- -5'
23968 5' -59.1 NC_005262.1 + 11104 0.67 0.446865
Target:  5'- cGUCGGCCGGcggccuuccugcucGAGCugcuucacaagcucGACGaUGCGCAc- -3'
miRNA:   3'- aCAGCCGGCC--------------UUCG--------------CUGC-GCGCGUuu -5'
23968 5' -59.1 NC_005262.1 + 50823 0.67 0.446865
Target:  5'- -uUCGcGCCGGAGaCGGgcacgcucggcauccCGCGCGCAGAa -3'
miRNA:   3'- acAGC-CGGCCUUcGCU---------------GCGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 43830 0.67 0.443054
Target:  5'- --aCGGCCGcGGGcCGGcCGCGCGCGGc -3'
miRNA:   3'- acaGCCGGCcUUC-GCU-GCGCGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 9931 0.67 0.440208
Target:  5'- uUGUCGGCCGGcuuGAGCG-CGaucugcuugccgucCGCGCc-- -3'
miRNA:   3'- -ACAGCCGGCC---UUCGCuGC--------------GCGCGuuu -5'
23968 5' -59.1 NC_005262.1 + 17165 0.68 0.433606
Target:  5'- ---aGGCCGGcAAG-GcCGCGCGCGAGg -3'
miRNA:   3'- acagCCGGCC-UUCgCuGCGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 44909 0.68 0.433606
Target:  5'- gGUCGGgaCUGGAuGCGGCGCaagGCGCu-- -3'
miRNA:   3'- aCAGCC--GGCCUuCGCUGCG---CGCGuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.