miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23969 5' -58.5 NC_005262.1 + 4954 0.67 0.533809
Target:  5'- cGUCGCCGaucugcgugccgaagCGCCGcaGCAg--CCAGCCu -3'
miRNA:   3'- -CAGCGGCa--------------GCGGC--CGUuaaGGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 50444 0.67 0.532772
Target:  5'- cGUCGUCGU-GCCGcGCGAggaggaCGGCCGc -3'
miRNA:   3'- -CAGCGGCAgCGGC-CGUUaag---GUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 16304 0.67 0.532772
Target:  5'- aGUCGUCGgaguaGCCGGCGuucUUCAGCg- -3'
miRNA:   3'- -CAGCGGCag---CGGCCGUua-AGGUCGgu -5'
23969 5' -58.5 NC_005262.1 + 33329 0.67 0.532772
Target:  5'- -gCGCCGUCGauguUGGCGuucUCCGGCUu -3'
miRNA:   3'- caGCGGCAGCg---GCCGUua-AGGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 43843 0.67 0.532772
Target:  5'- --gGCCG-CGCgCGGCGGUgcgCCGGCa- -3'
miRNA:   3'- cagCGGCaGCG-GCCGUUAa--GGUCGgu -5'
23969 5' -58.5 NC_005262.1 + 20458 0.67 0.532772
Target:  5'- cGUCGCCG-CGUgGGCuGUUCC-GCa- -3'
miRNA:   3'- -CAGCGGCaGCGgCCGuUAAGGuCGgu -5'
23969 5' -58.5 NC_005262.1 + 19603 0.67 0.531736
Target:  5'- cGUCGCCuUCggugcgaguggcgGUCGGCG--UCCAGCCc -3'
miRNA:   3'- -CAGCGGcAG-------------CGGCCGUuaAGGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 27375 0.67 0.522442
Target:  5'- --gGCCGUCGUCGGCGccUCC-GCgAa -3'
miRNA:   3'- cagCGGCAGCGGCCGUuaAGGuCGgU- -5'
23969 5' -58.5 NC_005262.1 + 10976 0.67 0.522442
Target:  5'- uGUCGgCG-CGCCGGgAAcgCCGGUCGc -3'
miRNA:   3'- -CAGCgGCaGCGGCCgUUaaGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 54628 0.67 0.512189
Target:  5'- cUCGUgGUcCGCCGaGCAGU-CCGGCUc -3'
miRNA:   3'- cAGCGgCA-GCGGC-CGUUAaGGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 23433 0.67 0.508112
Target:  5'- cGUCGaCGUCGCCGaCGAUcgacaucagcgcgCCGGCCGu -3'
miRNA:   3'- -CAGCgGCAGCGGCcGUUAa------------GGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 48037 0.67 0.502021
Target:  5'- aGUCGCCG--GCCGGCAGgugcuucgUCCAGa-- -3'
miRNA:   3'- -CAGCGGCagCGGCCGUUa-------AGGUCggu -5'
23969 5' -58.5 NC_005262.1 + 53776 0.67 0.502021
Target:  5'- --gGCUGUaCGUCGGCGAUaCCGGCa- -3'
miRNA:   3'- cagCGGCA-GCGGCCGUUAaGGUCGgu -5'
23969 5' -58.5 NC_005262.1 + 3675 0.67 0.502021
Target:  5'- --gGCCGUCGCUGGCcgugacgacgguGAUgCCGGCg- -3'
miRNA:   3'- cagCGGCAGCGGCCG------------UUAaGGUCGgu -5'
23969 5' -58.5 NC_005262.1 + 24884 0.67 0.502021
Target:  5'- -cCGCCGgCGCgugacaGGCGAgcucggCCAGCCGg -3'
miRNA:   3'- caGCGGCaGCGg-----CCGUUaa----GGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 17332 0.67 0.502021
Target:  5'- -gCGUCGUgGCCGGCGcggcAUUCgGGuCCGg -3'
miRNA:   3'- caGCGGCAgCGGCCGU----UAAGgUC-GGU- -5'
23969 5' -58.5 NC_005262.1 + 6589 0.67 0.491942
Target:  5'- -aUGCCGcCGaCCGGCAggUCCgGGUCGa -3'
miRNA:   3'- caGCGGCaGC-GGCCGUuaAGG-UCGGU- -5'
23969 5' -58.5 NC_005262.1 + 40098 0.67 0.491942
Target:  5'- gGUCGaCCGUgCGCCGGUAGacCCAcacgcGCCGc -3'
miRNA:   3'- -CAGC-GGCA-GCGGCCGUUaaGGU-----CGGU- -5'
23969 5' -58.5 NC_005262.1 + 41670 0.67 0.491942
Target:  5'- -gCGCCGUcaucgcCGCCGGCA---CCGGCa- -3'
miRNA:   3'- caGCGGCA------GCGGCCGUuaaGGUCGgu -5'
23969 5' -58.5 NC_005262.1 + 59355 0.67 0.491942
Target:  5'- aUCGCaaaGUaCGCCGGCAAcgCCgAGCUc -3'
miRNA:   3'- cAGCGg--CA-GCGGCCGUUaaGG-UCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.