Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23971 | 3' | -62.1 | NC_005262.1 | + | 43813 | 0.66 | 0.379013 |
Target: 5'- -cGGGCgaucgcgGCGAcaCGGCCgCGG-GCCGGCc -3' miRNA: 3'- uaUCCG-------CGCUa-GCCGG-GCCuCGGCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 11730 | 0.66 | 0.363198 |
Target: 5'- ---aGCGCGAcgcCGGCgCCGccGAGCCGAUg -3' miRNA: 3'- uaucCGCGCUa--GCCG-GGC--CUCGGCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 42237 | 0.66 | 0.371464 |
Target: 5'- --cGGcCGCGAcCgGGCCCGGcGCCG-Cg -3' miRNA: 3'- uauCC-GCGCUaG-CCGGGCCuCGGCuG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 59008 | 0.66 | 0.388378 |
Target: 5'- -aAGcGCGCGccAUCGGUCgGGccGCCGGCc -3' miRNA: 3'- uaUC-CGCGC--UAGCCGGgCCu-CGGCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 41594 | 0.66 | 0.388378 |
Target: 5'- --cGGUGUGGgugUGGCCCGGAucGgUGACg -3' miRNA: 3'- uauCCGCGCUa--GCCGGGCCU--CgGCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 43140 | 0.66 | 0.396152 |
Target: 5'- -cGGcGCGCGGUgcCGGCCgGGucgauguacucguAGCUGGCg -3' miRNA: 3'- uaUC-CGCGCUA--GCCGGgCC-------------UCGGCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 34106 | 0.66 | 0.397022 |
Target: 5'- --cGGCGCacGAUgCGGCCCGGcgucacGCCGuCc -3' miRNA: 3'- uauCCGCG--CUA-GCCGGGCCu-----CGGCuG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 46770 | 0.66 | 0.397022 |
Target: 5'- --cGGCGCuGAcugcaUCGGCgggcgUCGGuGCCGGCg -3' miRNA: 3'- uauCCGCG-CU-----AGCCG-----GGCCuCGGCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 50351 | 0.66 | 0.404907 |
Target: 5'- --cGGCGCGggCGcGCCCucguugcGGcggucgaucucGGCCGACa -3' miRNA: 3'- uauCCGCGCuaGC-CGGG-------CC-----------UCGGCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 6554 | 0.66 | 0.414677 |
Target: 5'- cUGGGCccGCGucgaugcCGGCgucucgCCGGAGCCGAa -3' miRNA: 3'- uAUCCG--CGCua-----GCCG------GGCCUCGGCUg -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 48213 | 0.66 | 0.388378 |
Target: 5'- -aGGGCGCGGUCGGUggCaugcaGGucauGcCCGACa -3' miRNA: 3'- uaUCCGCGCUAGCCG--Gg----CCu---C-GGCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 32709 | 0.66 | 0.397022 |
Target: 5'- gGUGGGCGacaucAUCGaGCUCGGcgugcugccGGCCGACc -3' miRNA: 3'- -UAUCCGCgc---UAGC-CGGGCC---------UCGGCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 15588 | 0.66 | 0.397022 |
Target: 5'- -gAGGCGCGcgCGcGCgaGGAGCgcgugCGGCa -3' miRNA: 3'- uaUCCGCGCuaGC-CGggCCUCG-----GCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 30611 | 0.66 | 0.397022 |
Target: 5'- -aGGGCGCGAagaUCGaG-CCGccGCCGACg -3' miRNA: 3'- uaUCCGCGCU---AGC-CgGGCcuCGGCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 16504 | 0.66 | 0.405789 |
Target: 5'- -gAGGCGCuGggCGcuGCgCUGGGGCUGACc -3' miRNA: 3'- uaUCCGCG-CuaGC--CG-GGCCUCGGCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 63404 | 0.66 | 0.405789 |
Target: 5'- -gAGGCGUcgGAgaaGGCCCGcaaAGCCGAg -3' miRNA: 3'- uaUCCGCG--CUag-CCGGGCc--UCGGCUg -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 10523 | 0.66 | 0.397022 |
Target: 5'- ---aGCGCGGgggCGGCCgaaaCGGcuauGCCGACg -3' miRNA: 3'- uaucCGCGCUa--GCCGG----GCCu---CGGCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 42151 | 0.67 | 0.339173 |
Target: 5'- --cGGCGCcg--GGCCCGGucgcGGCCGAUc -3' miRNA: 3'- uauCCGCGcuagCCGGGCC----UCGGCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 43285 | 0.67 | 0.347052 |
Target: 5'- --cGGUGUGAUCcugaucgagGGCUCGGuGCUGAUg -3' miRNA: 3'- uauCCGCGCUAG---------CCGGGCCuCGGCUG- -5' |
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23971 | 3' | -62.1 | NC_005262.1 | + | 46398 | 0.67 | 0.35506 |
Target: 5'- -cAGGCGCGccucGUCGGgCUGG-GCCcGCa -3' miRNA: 3'- uaUCCGCGC----UAGCCgGGCCuCGGcUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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