miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23971 3' -62.1 NC_005262.1 + 50081 0.67 0.339173
Target:  5'- --cGGCGCGGcuucaUCGG-CgGGAGCgGGCg -3'
miRNA:   3'- uauCCGCGCU-----AGCCgGgCCUCGgCUG- -5'
23971 3' -62.1 NC_005262.1 + 29740 0.67 0.331425
Target:  5'- -cGGGCGCGggCGGCaugCCGcucgcuGCCGAUg -3'
miRNA:   3'- uaUCCGCGCuaGCCG---GGCcu----CGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 857 0.67 0.329892
Target:  5'- -aGGGCGCGGaCGGCCuugauaaauccuuCGGgcugcauAGCUGACa -3'
miRNA:   3'- uaUCCGCGCUaGCCGG-------------GCC-------UCGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 59461 0.67 0.323808
Target:  5'- ---uGCGCGAgc-GCCUGGAGCuCGGCg -3'
miRNA:   3'- uaucCGCGCUagcCGGGCCUCG-GCUG- -5'
23971 3' -62.1 NC_005262.1 + 43914 0.67 0.323808
Target:  5'- ---cGCGCGGcCGGCCCGcGGCCGuguCg -3'
miRNA:   3'- uaucCGCGCUaGCCGGGCcUCGGCu--G- -5'
23971 3' -62.1 NC_005262.1 + 60837 0.67 0.323808
Target:  5'- --cGGCcuacGCGAUCGGCgUGGcgauGGCCGAg -3'
miRNA:   3'- uauCCG----CGCUAGCCGgGCC----UCGGCUg -5'
23971 3' -62.1 NC_005262.1 + 51179 0.67 0.316323
Target:  5'- -cAGGCagccgacgacGCGG-CGGCCCgcuGGAGCCGcGCg -3'
miRNA:   3'- uaUCCG----------CGCUaGCCGGG---CCUCGGC-UG- -5'
23971 3' -62.1 NC_005262.1 + 25354 0.67 0.316323
Target:  5'- -cAGGuUGCGGUgccagaggCGGCgCaGGAGCCGGCg -3'
miRNA:   3'- uaUCC-GCGCUA--------GCCGgG-CCUCGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 46541 0.68 0.301745
Target:  5'- --cGGCGCGGcauUCgGGUCCGGcGCgGGCg -3'
miRNA:   3'- uauCCGCGCU---AG-CCGGGCCuCGgCUG- -5'
23971 3' -62.1 NC_005262.1 + 57018 0.68 0.294652
Target:  5'- -cGGGCGCGAUCuucaaccGCUucaaGGAGCUGGCc -3'
miRNA:   3'- uaUCCGCGCUAGc------CGGg---CCUCGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 38549 0.68 0.294652
Target:  5'- --cGGUGaCGAUCGGCaCCGccgcGGGCCGGa -3'
miRNA:   3'- uauCCGC-GCUAGCCG-GGC----CUCGGCUg -5'
23971 3' -62.1 NC_005262.1 + 34543 0.68 0.294652
Target:  5'- cGUAGGCucCGggCaGCCCGGAGCgaaCGGCa -3'
miRNA:   3'- -UAUCCGc-GCuaGcCGGGCCUCG---GCUG- -5'
23971 3' -62.1 NC_005262.1 + 43954 0.68 0.294652
Target:  5'- cAUGcGCGCGAUCGcGCCgaGGuccuGCCGGCc -3'
miRNA:   3'- -UAUcCGCGCUAGC-CGGg-CCu---CGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 3742 0.68 0.288381
Target:  5'- gAUGGGUuccgcgcggcucagGCGAUCGaGCCCuucgacgaugagaacGGAGCCGGu -3'
miRNA:   3'- -UAUCCG--------------CGCUAGC-CGGG---------------CCUCGGCUg -5'
23971 3' -62.1 NC_005262.1 + 9242 0.68 0.276822
Target:  5'- -aAGGCGCcgGGUgauccgcauuccgacCGGCCCGGcGCCGGu -3'
miRNA:   3'- uaUCCGCG--CUA---------------GCCGGGCCuCGGCUg -5'
23971 3' -62.1 NC_005262.1 + 59061 0.68 0.274156
Target:  5'- -gAGGCGUGA--GGCcgCCGGcGGCCGGCu -3'
miRNA:   3'- uaUCCGCGCUagCCG--GGCC-UCGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 43773 0.69 0.261136
Target:  5'- ---cGCGCGAauUCGGCCCGGcuuGGCUuGCg -3'
miRNA:   3'- uaucCGCGCU--AGCCGGGCC---UCGGcUG- -5'
23971 3' -62.1 NC_005262.1 + 35881 0.69 0.254818
Target:  5'- ---cGCGCGcaccuAUCGGCUcauccaCGGGGCCGGCa -3'
miRNA:   3'- uaucCGCGC-----UAGCCGG------GCCUCGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 44326 0.69 0.248625
Target:  5'- -gAGGCGCGucacCGGUCUGGuGCCcGCa -3'
miRNA:   3'- uaUCCGCGCua--GCCGGGCCuCGGcUG- -5'
23971 3' -62.1 NC_005262.1 + 53477 0.69 0.248625
Target:  5'- --cGGCGUGAagUGGCUCGGcacGGCCGAa -3'
miRNA:   3'- uauCCGCGCUa-GCCGGGCC---UCGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.