miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23971 3' -62.1 NC_005262.1 + 46398 0.67 0.35506
Target:  5'- -cAGGCGCGccucGUCGGgCUGG-GCCcGCa -3'
miRNA:   3'- uaUCCGCGC----UAGCCgGGCCuCGGcUG- -5'
23971 3' -62.1 NC_005262.1 + 3742 0.68 0.288381
Target:  5'- gAUGGGUuccgcgcggcucagGCGAUCGaGCCCuucgacgaugagaacGGAGCCGGu -3'
miRNA:   3'- -UAUCCG--------------CGCUAGC-CGGG---------------CCUCGGCUg -5'
23971 3' -62.1 NC_005262.1 + 38549 0.68 0.294652
Target:  5'- --cGGUGaCGAUCGGCaCCGccgcGGGCCGGa -3'
miRNA:   3'- uauCCGC-GCUAGCCG-GGC----CUCGGCUg -5'
23971 3' -62.1 NC_005262.1 + 57018 0.68 0.294652
Target:  5'- -cGGGCGCGAUCuucaaccGCUucaaGGAGCUGGCc -3'
miRNA:   3'- uaUCCGCGCUAGc------CGGg---CCUCGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 51179 0.67 0.316323
Target:  5'- -cAGGCagccgacgacGCGG-CGGCCCgcuGGAGCCGcGCg -3'
miRNA:   3'- uaUCCG----------CGCUaGCCGGG---CCUCGGC-UG- -5'
23971 3' -62.1 NC_005262.1 + 60837 0.67 0.323808
Target:  5'- --cGGCcuacGCGAUCGGCgUGGcgauGGCCGAg -3'
miRNA:   3'- uauCCG----CGCUAGCCGgGCC----UCGGCUg -5'
23971 3' -62.1 NC_005262.1 + 857 0.67 0.329892
Target:  5'- -aGGGCGCGGaCGGCCuugauaaauccuuCGGgcugcauAGCUGACa -3'
miRNA:   3'- uaUCCGCGCUaGCCGG-------------GCC-------UCGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 42151 0.67 0.339173
Target:  5'- --cGGCGCcg--GGCCCGGucgcGGCCGAUc -3'
miRNA:   3'- uauCCGCGcuagCCGGGCC----UCGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 43285 0.67 0.347052
Target:  5'- --cGGUGUGAUCcugaucgagGGCUCGGuGCUGAUg -3'
miRNA:   3'- uauCCGCGCUAG---------CCGGGCCuCGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 35881 0.69 0.254818
Target:  5'- ---cGCGCGcaccuAUCGGCUcauccaCGGGGCCGGCa -3'
miRNA:   3'- uaucCGCGC-----UAGCCGG------GCCUCGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 53477 0.69 0.248625
Target:  5'- --cGGCGUGAagUGGCUCGGcacGGCCGAa -3'
miRNA:   3'- uauCCGCGCUa-GCCGGGCC---UCGGCUg -5'
23971 3' -62.1 NC_005262.1 + 44326 0.69 0.248625
Target:  5'- -gAGGCGCGucacCGGUCUGGuGCCcGCa -3'
miRNA:   3'- uaUCCGCGCua--GCCGGGCCuCGGcUG- -5'
23971 3' -62.1 NC_005262.1 + 49837 0.81 0.031249
Target:  5'- -gAGcGCGCGAaUGGCCCGGuGCCGGCg -3'
miRNA:   3'- uaUC-CGCGCUaGCCGGGCCuCGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 43874 0.71 0.183684
Target:  5'- --cGGCGCGAUCGcGCgCauGGCCGACa -3'
miRNA:   3'- uauCCGCGCUAGC-CGgGccUCGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 44159 0.71 0.183684
Target:  5'- ---cGCGCGAUCGGgCaGGAGCgCGGCg -3'
miRNA:   3'- uaucCGCGCUAGCCgGgCCUCG-GCUG- -5'
23971 3' -62.1 NC_005262.1 + 21859 0.7 0.203476
Target:  5'- -cAGGUGCaggGAUCGGCgCUGaAGCCGACc -3'
miRNA:   3'- uaUCCGCG---CUAGCCG-GGCcUCGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 60189 0.7 0.208705
Target:  5'- aGUGGGCgGCaacCGGCaaGGAGCCGGCc -3'
miRNA:   3'- -UAUCCG-CGcuaGCCGggCCUCGGCUG- -5'
23971 3' -62.1 NC_005262.1 + 35238 0.7 0.210829
Target:  5'- --cGGCGCGAUCGGCagcggcugggcgcccCCGGcgaacGGCaCGACc -3'
miRNA:   3'- uauCCGCGCUAGCCG---------------GGCC-----UCG-GCUG- -5'
23971 3' -62.1 NC_005262.1 + 24741 0.7 0.225092
Target:  5'- ---cGCGCGAUCGGCgUGcGGCCGAa -3'
miRNA:   3'- uaucCGCGCUAGCCGgGCcUCGGCUg -5'
23971 3' -62.1 NC_005262.1 + 34002 0.69 0.236613
Target:  5'- cAUGGGCGCGGaCGGCgugacgCCGG-GCCG-Ca -3'
miRNA:   3'- -UAUCCGCGCUaGCCG------GGCCuCGGCuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.