miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23971 5' -53.3 NC_005262.1 + 17382 0.66 0.857697
Target:  5'- cCUGCCGgucgACUCGgcgGCCGAcaa-UGCCGa -3'
miRNA:   3'- -GACGGU----UGGGCa--UGGCUaaugACGGU- -5'
23971 5' -53.3 NC_005262.1 + 54446 0.66 0.848343
Target:  5'- uCUGCCAGCCCuucGCCGggUccucguagaucgaGgUGCCGa -3'
miRNA:   3'- -GACGGUUGGGca-UGGCuaA-------------UgACGGU- -5'
23971 5' -53.3 NC_005262.1 + 15885 0.66 0.831536
Target:  5'- -gGCUuuuGCCgGUGCCGGggUUGCcGCCGa -3'
miRNA:   3'- gaCGGu--UGGgCAUGGCU--AAUGaCGGU- -5'
23971 5' -53.3 NC_005262.1 + 61057 0.66 0.831536
Target:  5'- -aGCCAGaUCGUGCCGGaUAC-GCCGu -3'
miRNA:   3'- gaCGGUUgGGCAUGGCUaAUGaCGGU- -5'
23971 5' -53.3 NC_005262.1 + 54135 0.66 0.822377
Target:  5'- gUGCCGucgucGCCCGUGCgcuCGAUggUGCUGUa- -3'
miRNA:   3'- gACGGU-----UGGGCAUG---GCUA--AUGACGgu -5'
23971 5' -53.3 NC_005262.1 + 50019 0.66 0.82145
Target:  5'- -cGCC-AUCCGgGCCGGUcgucaggcgguacUGCUGCCc -3'
miRNA:   3'- gaCGGuUGGGCaUGGCUA-------------AUGACGGu -5'
23971 5' -53.3 NC_005262.1 + 14605 0.66 0.813015
Target:  5'- aCUGCCAugCUGuUGCCGAUc---GCCu -3'
miRNA:   3'- -GACGGUugGGC-AUGGCUAaugaCGGu -5'
23971 5' -53.3 NC_005262.1 + 45510 0.67 0.803459
Target:  5'- -cGCCcauaAGCCCG-GCCGAguuuugcgcgGCUGCCu -3'
miRNA:   3'- gaCGG----UUGGGCaUGGCUaa--------UGACGGu -5'
23971 5' -53.3 NC_005262.1 + 17610 0.67 0.803459
Target:  5'- -cGCguGCCCGUGCauCGucgucagGCUGCCGa -3'
miRNA:   3'- gaCGguUGGGCAUG--GCuaa----UGACGGU- -5'
23971 5' -53.3 NC_005262.1 + 24370 0.67 0.803459
Target:  5'- -gGCgAGCgUCGcGCCGAUUGCUGCgAa -3'
miRNA:   3'- gaCGgUUG-GGCaUGGCUAAUGACGgU- -5'
23971 5' -53.3 NC_005262.1 + 38143 0.67 0.797637
Target:  5'- -cGCCAGCggCCGUGCCGuucgucgugaUGCCGa -3'
miRNA:   3'- gaCGGUUG--GGCAUGGCuaaug-----ACGGU- -5'
23971 5' -53.3 NC_005262.1 + 2060 0.67 0.793721
Target:  5'- aCUGCCAACaCGgcaUGCCGcau-CUGCCGg -3'
miRNA:   3'- -GACGGUUGgGC---AUGGCuaauGACGGU- -5'
23971 5' -53.3 NC_005262.1 + 42360 0.67 0.773741
Target:  5'- -cGCCGguGCCCGUGCCGcucgucGCCGc -3'
miRNA:   3'- gaCGGU--UGGGCAUGGCuaaugaCGGU- -5'
23971 5' -53.3 NC_005262.1 + 1474 0.68 0.710605
Target:  5'- -cGCCcGCUCGUcuGCCGGc-GCUGCCGc -3'
miRNA:   3'- gaCGGuUGGGCA--UGGCUaaUGACGGU- -5'
23971 5' -53.3 NC_005262.1 + 55099 0.68 0.710605
Target:  5'- -cGCCGACCgCGUGCgCGAggUACaUGUCGc -3'
miRNA:   3'- gaCGGUUGG-GCAUG-GCUa-AUG-ACGGU- -5'
23971 5' -53.3 NC_005262.1 + 12121 0.69 0.686613
Target:  5'- uCUGCCAugCCGgggacgcgcgcgACCaGAUUGC-GCCGu -3'
miRNA:   3'- -GACGGUugGGCa-----------UGG-CUAAUGaCGGU- -5'
23971 5' -53.3 NC_005262.1 + 40819 0.69 0.677819
Target:  5'- -cGCCGccGCCCGUGCuCGAggGCgucagcGCCGc -3'
miRNA:   3'- gaCGGU--UGGGCAUG-GCUaaUGa-----CGGU- -5'
23971 5' -53.3 NC_005262.1 + 35124 0.7 0.622436
Target:  5'- gCUGCCGACCaagaCGUACCuGUcGCUGCa- -3'
miRNA:   3'- -GACGGUUGG----GCAUGGcUAaUGACGgu -5'
23971 5' -53.3 NC_005262.1 + 41452 0.71 0.567254
Target:  5'- -aGCCGugCCGUucguGCCGuccgcgaGCUGCCAu -3'
miRNA:   3'- gaCGGUugGGCA----UGGCuaa----UGACGGU- -5'
23971 5' -53.3 NC_005262.1 + 27763 0.71 0.556344
Target:  5'- aCUGCCAuCUCGgcCCGAUuaucuUGCUGUCGg -3'
miRNA:   3'- -GACGGUuGGGCauGGCUA-----AUGACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.