miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23972 5' -56 NC_005262.1 + 5157 0.66 0.722843
Target:  5'- ---gGUCGCACGCGCCgcCG-CCGcGGg -3'
miRNA:   3'- uaagCAGCGUGCGUGG--GCaGGCuUCa -5'
23972 5' -56 NC_005262.1 + 53988 0.66 0.722843
Target:  5'- --gCGUCGCGCagACCCGUCCa---- -3'
miRNA:   3'- uaaGCAGCGUGcgUGGGCAGGcuuca -5'
23972 5' -56 NC_005262.1 + 63309 0.66 0.722843
Target:  5'- --gCGUCGacguggaacaCGCGCGCCgCGUcgCCGAGGUc -3'
miRNA:   3'- uaaGCAGC----------GUGCGUGG-GCA--GGCUUCA- -5'
23972 5' -56 NC_005262.1 + 13484 0.66 0.701675
Target:  5'- --gCGUCGCGCGCuACUCGcuggCGAAGg -3'
miRNA:   3'- uaaGCAGCGUGCG-UGGGCag--GCUUCa -5'
23972 5' -56 NC_005262.1 + 15978 0.66 0.701675
Target:  5'- --aCGUCGCGCGCACgCGg-CGGAu- -3'
miRNA:   3'- uaaGCAGCGUGCGUGgGCagGCUUca -5'
23972 5' -56 NC_005262.1 + 44229 0.66 0.701675
Target:  5'- -aUCG-CGCGCGCGUCCGgCCGGAa- -3'
miRNA:   3'- uaAGCaGCGUGCGUGGGCaGGCUUca -5'
23972 5' -56 NC_005262.1 + 27498 0.66 0.690986
Target:  5'- -cUCGacggaGCGCGUucGCCCGUcgCCGAAGUc -3'
miRNA:   3'- uaAGCag---CGUGCG--UGGGCA--GGCUUCA- -5'
23972 5' -56 NC_005262.1 + 11243 0.66 0.690986
Target:  5'- -gUUGUCGCAgGgcCGCCCGUgcgaCCGGAGc -3'
miRNA:   3'- uaAGCAGCGUgC--GUGGGCA----GGCUUCa -5'
23972 5' -56 NC_005262.1 + 50428 0.66 0.680243
Target:  5'- -gUCGUCGCGgGCGCUuCGUCCu---- -3'
miRNA:   3'- uaAGCAGCGUgCGUGG-GCAGGcuuca -5'
23972 5' -56 NC_005262.1 + 40732 0.66 0.680243
Target:  5'- ---gGUCGCugACGCcguGCCCGUggCCGggGUc -3'
miRNA:   3'- uaagCAGCG--UGCG---UGGGCA--GGCuuCA- -5'
23972 5' -56 NC_005262.1 + 24586 0.67 0.669455
Target:  5'- --gUGUCGCgguGCGCugacaaggugaGCCCGUaCCGGAGg -3'
miRNA:   3'- uaaGCAGCG---UGCG-----------UGGGCA-GGCUUCa -5'
23972 5' -56 NC_005262.1 + 23964 0.67 0.636926
Target:  5'- --gUGUgGCGCGCAgUUCGUUCGAAGUc -3'
miRNA:   3'- uaaGCAgCGUGCGU-GGGCAGGCUUCA- -5'
23972 5' -56 NC_005262.1 + 45995 0.67 0.626062
Target:  5'- -aUCGgCGCGCGCAUCCGgUCGGAu- -3'
miRNA:   3'- uaAGCaGCGUGCGUGGGCaGGCUUca -5'
23972 5' -56 NC_005262.1 + 60796 0.67 0.626062
Target:  5'- -gUCGUCGUccauccccgACGCGCCCG--CGAAGa -3'
miRNA:   3'- uaAGCAGCG---------UGCGUGGGCagGCUUCa -5'
23972 5' -56 NC_005262.1 + 745 0.67 0.624976
Target:  5'- --gCGUCGgaacggucgugaaCACGCGCUCGUcgCCGAGGUu -3'
miRNA:   3'- uaaGCAGC-------------GUGCGUGGGCA--GGCUUCA- -5'
23972 5' -56 NC_005262.1 + 49580 0.68 0.615203
Target:  5'- -aUCG-CGCuGCGCGCaCCG-CCGGAGa -3'
miRNA:   3'- uaAGCaGCG-UGCGUG-GGCaGGCUUCa -5'
23972 5' -56 NC_005262.1 + 20595 0.68 0.571997
Target:  5'- -gUCGUCGCGaGCGCCgCG-CCGAuGGUg -3'
miRNA:   3'- uaAGCAGCGUgCGUGG-GCaGGCU-UCA- -5'
23972 5' -56 NC_005262.1 + 44680 0.69 0.550649
Target:  5'- --aCG-CGCcCGCGCCCGaUCCGAAcGUg -3'
miRNA:   3'- uaaGCaGCGuGCGUGGGC-AGGCUU-CA- -5'
23972 5' -56 NC_005262.1 + 52806 0.69 0.550649
Target:  5'- cUUCGUCaGCAgCGCgGCCuCGUCCGgcGUc -3'
miRNA:   3'- uAAGCAG-CGU-GCG-UGG-GCAGGCuuCA- -5'
23972 5' -56 NC_005262.1 + 61152 0.69 0.544291
Target:  5'- cUUCGUCGacgGCGUAUCCGgcacgaucuggcugCCGAAGUg -3'
miRNA:   3'- uAAGCAGCg--UGCGUGGGCa-------------GGCUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.