miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23973 3' -59.1 NC_005262.1 + 57413 0.66 0.535531
Target:  5'- aCGGCGCGCccagaCGGuugccGAUCuGCUCGAu -3'
miRNA:   3'- aGUCGCGCGa----GCCc----CUAGuCGAGCUu -5'
23973 3' -59.1 NC_005262.1 + 27075 0.66 0.51485
Target:  5'- gCGGCGCGCUCGGcGGGcgUgAGCg---- -3'
miRNA:   3'- aGUCGCGCGAGCC-CCU--AgUCGagcuu -5'
23973 3' -59.1 NC_005262.1 + 62735 0.66 0.4945
Target:  5'- aUCGGCGCGCU-GGcGGUCAGCgccgcagcauUCGGc -3'
miRNA:   3'- -AGUCGCGCGAgCCcCUAGUCG----------AGCUu -5'
23973 3' -59.1 NC_005262.1 + 34574 0.66 0.4945
Target:  5'- --cGCGCGCcgccgCGcGGAUguGCUCGAAc -3'
miRNA:   3'- aguCGCGCGa----GCcCCUAguCGAGCUU- -5'
23973 3' -59.1 NC_005262.1 + 34766 0.66 0.493492
Target:  5'- cCGGCGCcgcucgaGCUCGGcGGAUCGGUgaaGGu -3'
miRNA:   3'- aGUCGCG-------CGAGCC-CCUAGUCGag-CUu -5'
23973 3' -59.1 NC_005262.1 + 10020 0.67 0.474524
Target:  5'- gUCAGCGCGCUgCGcuuugcgccGGuGUgAGCUCGAu -3'
miRNA:   3'- -AGUCGCGCGA-GC---------CCcUAgUCGAGCUu -5'
23973 3' -59.1 NC_005262.1 + 13224 0.67 0.470578
Target:  5'- gCAGCGCGCgCGGcGGAccuaauugugccaCGGUUCGAAu -3'
miRNA:   3'- aGUCGCGCGaGCC-CCUa------------GUCGAGCUU- -5'
23973 3' -59.1 NC_005262.1 + 5233 0.67 0.464689
Target:  5'- aUCAGCGCGC-CGagcaGGAUCAGCg---- -3'
miRNA:   3'- -AGUCGCGCGaGCc---CCUAGUCGagcuu -5'
23973 3' -59.1 NC_005262.1 + 28231 0.69 0.364293
Target:  5'- --cGCGCGCUCGGGGAagauGGCgagcaugacgUCGAGg -3'
miRNA:   3'- aguCGCGCGAGCCCCUag--UCG----------AGCUU- -5'
23973 3' -59.1 NC_005262.1 + 10977 0.69 0.355939
Target:  5'- gUCGGCGCGC-CGGGaacgccGGUCGcGCUCGc- -3'
miRNA:   3'- -AGUCGCGCGaGCCC------CUAGU-CGAGCuu -5'
23973 3' -59.1 NC_005262.1 + 53916 0.69 0.355939
Target:  5'- gCGcCGCGC-CGGuGGUCAGCUCGAu -3'
miRNA:   3'- aGUcGCGCGaGCCcCUAGUCGAGCUu -5'
23973 3' -59.1 NC_005262.1 + 50057 0.69 0.355111
Target:  5'- -gGGCGcCGCugucucgUCGGcGAUCGGCUCGAAc -3'
miRNA:   3'- agUCGC-GCG-------AGCCcCUAGUCGAGCUU- -5'
23973 3' -59.1 NC_005262.1 + 15974 0.69 0.34772
Target:  5'- --cGCGCGCacgCGGcGGAUCAGCgccaucgcgUCGAGg -3'
miRNA:   3'- aguCGCGCGa--GCC-CCUAGUCG---------AGCUU- -5'
23973 3' -59.1 NC_005262.1 + 57496 0.71 0.279931
Target:  5'- gUCGGcCGCcuuCUCGGcGGUCAGCUCGAu -3'
miRNA:   3'- -AGUC-GCGc--GAGCCcCUAGUCGAGCUu -5'
23973 3' -59.1 NC_005262.1 + 17742 0.73 0.201124
Target:  5'- cUCGGCGCGCUggCGGGcGAUCucugccugcuGCUCGGc -3'
miRNA:   3'- -AGUCGCGCGA--GCCC-CUAGu---------CGAGCUu -5'
23973 3' -59.1 NC_005262.1 + 51978 0.73 0.185914
Target:  5'- gUCGGUGcCGUUCGGcGGcGUCGGCUCGGu -3'
miRNA:   3'- -AGUCGC-GCGAGCC-CC-UAGUCGAGCUu -5'
23973 3' -59.1 NC_005262.1 + 3436 1.06 0.000749
Target:  5'- uUCAGCGCGCUCGGGGAUCAGCUCGAAc -3'
miRNA:   3'- -AGUCGCGCGAGCCCCUAGUCGAGCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.