miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23973 5' -57.3 NC_005262.1 + 18780 0.65 0.683998
Target:  5'- uUCCUUCAgCCCGUaagcaaucgccacgUGCGGcUCGUuguccaGCCa -3'
miRNA:   3'- gAGGGAGU-GGGUA--------------ACGCCuAGCG------CGG- -5'
23973 5' -57.3 NC_005262.1 + 29887 0.66 0.676571
Target:  5'- -gUCCUCACauagGUUGCuGGGgugcCGCGCCg -3'
miRNA:   3'- gaGGGAGUGgg--UAACG-CCUa---GCGCGG- -5'
23973 5' -57.3 NC_005262.1 + 49319 0.66 0.676571
Target:  5'- --aCCUCGCgC---GCGGAcugCGCGCCg -3'
miRNA:   3'- gagGGAGUGgGuaaCGCCUa--GCGCGG- -5'
23973 5' -57.3 NC_005262.1 + 16006 0.66 0.665929
Target:  5'- -cUCCUCGCUC--UGCGGcgcAUCGCGgCg -3'
miRNA:   3'- gaGGGAGUGGGuaACGCC---UAGCGCgG- -5'
23973 5' -57.3 NC_005262.1 + 10938 0.66 0.655257
Target:  5'- -gCCCUCACUCAugccgcccccUgagcgcgGCGGA-CGCGCa -3'
miRNA:   3'- gaGGGAGUGGGU----------Aa------CGCCUaGCGCGg -5'
23973 5' -57.3 NC_005262.1 + 57032 0.66 0.655257
Target:  5'- ---aCUCGCCCGc-GCGGAUCgGCGUg -3'
miRNA:   3'- gaggGAGUGGGUaaCGCCUAG-CGCGg -5'
23973 5' -57.3 NC_005262.1 + 1581 0.66 0.655257
Target:  5'- cCUCCCUC-CgCAgaugcaGCGGca-GCGCCg -3'
miRNA:   3'- -GAGGGAGuGgGUaa----CGCCuagCGCGG- -5'
23973 5' -57.3 NC_005262.1 + 44712 0.66 0.644566
Target:  5'- cCUCCCaUGCCUugcgcGCGGGcuucUCGCGCUc -3'
miRNA:   3'- -GAGGGaGUGGGuaa--CGCCU----AGCGCGG- -5'
23973 5' -57.3 NC_005262.1 + 49788 0.66 0.631721
Target:  5'- -gCCCggCACgCCGUcGCGGuucagguugcgCGCGCCg -3'
miRNA:   3'- gaGGGa-GUG-GGUAaCGCCua---------GCGCGG- -5'
23973 5' -57.3 NC_005262.1 + 8993 0.67 0.623158
Target:  5'- uUCgCCgcgCACCCAagaGCGGAccgUCGUGCg -3'
miRNA:   3'- gAG-GGa--GUGGGUaa-CGCCU---AGCGCGg -5'
23973 5' -57.3 NC_005262.1 + 15167 0.67 0.623158
Target:  5'- uUgCCUCcgGCCCGagGCGGGUacaGCGaCCa -3'
miRNA:   3'- gAgGGAG--UGGGUaaCGCCUAg--CGC-GG- -5'
23973 5' -57.3 NC_005262.1 + 52688 0.67 0.623158
Target:  5'- uUCagCUCGCCCGgcuuuacGCGGuaGUCGuCGCCg -3'
miRNA:   3'- gAGg-GAGUGGGUaa-----CGCC--UAGC-GCGG- -5'
23973 5' -57.3 NC_005262.1 + 45264 0.67 0.601781
Target:  5'- -gCCgUUACCCA-UGuuGAUCGCGUCc -3'
miRNA:   3'- gaGGgAGUGGGUaACgcCUAGCGCGG- -5'
23973 5' -57.3 NC_005262.1 + 29795 0.67 0.601781
Target:  5'- gCUgCUUgGCCCggUGCGGGcggUUGCGCa -3'
miRNA:   3'- -GAgGGAgUGGGuaACGCCU---AGCGCGg -5'
23973 5' -57.3 NC_005262.1 + 25659 0.67 0.592189
Target:  5'- uUCCCgaACUCGgagaugugcaggcgGUGGAUCGUGCCg -3'
miRNA:   3'- gAGGGagUGGGUaa------------CGCCUAGCGCGG- -5'
23973 5' -57.3 NC_005262.1 + 13089 0.67 0.569918
Target:  5'- gCUCCUgcgcguaCACCCAcgucacgcGCGGGUCGCGgUCg -3'
miRNA:   3'- -GAGGGa------GUGGGUaa------CGCCUAGCGC-GG- -5'
23973 5' -57.3 NC_005262.1 + 57826 0.68 0.563591
Target:  5'- -gCCCUCgagcgccuugacgauACUCA-UGCGGcgCGCGUCg -3'
miRNA:   3'- gaGGGAG---------------UGGGUaACGCCuaGCGCGG- -5'
23973 5' -57.3 NC_005262.1 + 59628 0.68 0.528136
Target:  5'- gCUCCUcgUgGCCCAUUGCGcgcuuGAccuUCGgGCCa -3'
miRNA:   3'- -GAGGG--AgUGGGUAACGC-----CU---AGCgCGG- -5'
23973 5' -57.3 NC_005262.1 + 60193 0.68 0.528136
Target:  5'- -gCCCUCguGCCCGaccaUGuuGAUCGUGCCc -3'
miRNA:   3'- gaGGGAG--UGGGUa---ACgcCUAGCGCGG- -5'
23973 5' -57.3 NC_005262.1 + 34868 0.68 0.517861
Target:  5'- -aCCCUCAUCUc--GUGGggCGCGCUc -3'
miRNA:   3'- gaGGGAGUGGGuaaCGCCuaGCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.