miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23975 3' -63.1 NC_005262.1 + 7749 0.66 0.38576
Target:  5'- uUGGCGuGCCgcUCGCGGagauaGCCGUCgccgccggCGUCg -3'
miRNA:   3'- uGCCGCuCGG--AGCGCC-----CGGCAG--------GUAG- -5'
23975 3' -63.1 NC_005262.1 + 33658 0.66 0.38576
Target:  5'- gACGaGCGcGCCUCGCuGGUCG-CCGc- -3'
miRNA:   3'- -UGC-CGCuCGGAGCGcCCGGCaGGUag -5'
23975 3' -63.1 NC_005262.1 + 28902 0.66 0.380721
Target:  5'- cGCGacGCGAGCUcgagaugCGCGGGCgCGaggucacggucgacgUCCAUCu -3'
miRNA:   3'- -UGC--CGCUCGGa------GCGCCCG-GC---------------AGGUAG- -5'
23975 3' -63.1 NC_005262.1 + 17188 0.66 0.377387
Target:  5'- cGCGGUGGaccuCCUCGCGGcCCGcCgCGUCg -3'
miRNA:   3'- -UGCCGCUc---GGAGCGCCcGGCaG-GUAG- -5'
23975 3' -63.1 NC_005262.1 + 53026 0.66 0.377387
Target:  5'- cCGGCGaAGCCcaggcggCGCaGGCCGUCguagAUCg -3'
miRNA:   3'- uGCCGC-UCGGa------GCGcCCGGCAGg---UAG- -5'
23975 3' -63.1 NC_005262.1 + 59695 0.66 0.369137
Target:  5'- uCGGCGuGCCgccaCGCGGGCgcuaCGUCg -3'
miRNA:   3'- uGCCGCuCGGa---GCGCCCGgcagGUAG- -5'
23975 3' -63.1 NC_005262.1 + 60686 0.66 0.369137
Target:  5'- cUGGCGAcGCUgggcuucuUCGCGGGCgCGUCgGg- -3'
miRNA:   3'- uGCCGCU-CGG--------AGCGCCCG-GCAGgUag -5'
23975 3' -63.1 NC_005262.1 + 28522 0.66 0.369137
Target:  5'- cACGGCGAGCacggCGCGGcCCGaUUCGa- -3'
miRNA:   3'- -UGCCGCUCGga--GCGCCcGGC-AGGUag -5'
23975 3' -63.1 NC_005262.1 + 52191 0.66 0.369137
Target:  5'- cACGGCGucGCCga---GGUCGUCCGUCa -3'
miRNA:   3'- -UGCCGCu-CGGagcgcCCGGCAGGUAG- -5'
23975 3' -63.1 NC_005262.1 + 12834 0.66 0.361011
Target:  5'- -gGaGCGcGGCCUCGCGGGaaCCGUCg--- -3'
miRNA:   3'- ugC-CGC-UCGGAGCGCCC--GGCAGguag -5'
23975 3' -63.1 NC_005262.1 + 48205 0.67 0.337391
Target:  5'- gACGcCGAGCUcuugCGCGcGGCgCGUCaCAUCa -3'
miRNA:   3'- -UGCcGCUCGGa---GCGC-CCG-GCAG-GUAG- -5'
23975 3' -63.1 NC_005262.1 + 34397 0.67 0.337391
Target:  5'- gGCGGCGAccguGCCguUCGCGaacucGCUGUCCuUCg -3'
miRNA:   3'- -UGCCGCU----CGG--AGCGCc----CGGCAGGuAG- -5'
23975 3' -63.1 NC_005262.1 + 42878 0.67 0.330527
Target:  5'- -gGGCGAcgcGCCggagacgauguaggGCuGGCCGUCCGUCg -3'
miRNA:   3'- ugCCGCU---CGGag------------CGcCCGGCAGGUAG- -5'
23975 3' -63.1 NC_005262.1 + 54634 0.67 0.329771
Target:  5'- cGCGGCGA-CgUCGCuGGCCGgaaUCCAa- -3'
miRNA:   3'- -UGCCGCUcGgAGCGcCCGGC---AGGUag -5'
23975 3' -63.1 NC_005262.1 + 29752 0.67 0.314915
Target:  5'- -gGGCGGGCUgCGCGGGCgCGggcggcaugCCGcUCg -3'
miRNA:   3'- ugCCGCUCGGaGCGCCCG-GCa--------GGU-AG- -5'
23975 3' -63.1 NC_005262.1 + 17911 0.67 0.307679
Target:  5'- uACGGCGAGCCgcCGauCGGcGCCGacgCCAa- -3'
miRNA:   3'- -UGCCGCUCGGa-GC--GCC-CGGCa--GGUag -5'
23975 3' -63.1 NC_005262.1 + 42149 0.67 0.307679
Target:  5'- cGCGGCGccgGGCCcggUCGCGG-CCGaUCGUCu -3'
miRNA:   3'- -UGCCGC---UCGG---AGCGCCcGGCaGGUAG- -5'
23975 3' -63.1 NC_005262.1 + 49851 0.67 0.300571
Target:  5'- aGCGGCcgGAGCCUcgggCGCGGGCgccgccggCGUCgGUg -3'
miRNA:   3'- -UGCCG--CUCGGA----GCGCCCG--------GCAGgUAg -5'
23975 3' -63.1 NC_005262.1 + 20671 0.67 0.300571
Target:  5'- uGCGGCGcGCCgcgcgcugcUCGcCGGGCUGcUCGUCu -3'
miRNA:   3'- -UGCCGCuCGG---------AGC-GCCCGGCaGGUAG- -5'
23975 3' -63.1 NC_005262.1 + 6316 0.67 0.299867
Target:  5'- cGCGGCGGGCUUCagcaucucgGCGGGCaccaacaaggaauCGUUCcgCg -3'
miRNA:   3'- -UGCCGCUCGGAG---------CGCCCG-------------GCAGGuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.