miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23976 5' -52.4 NC_005262.1 + 23568 0.66 0.874955
Target:  5'- -cCGCCGCGCGCGGGCgCaGGAGa--- -3'
miRNA:   3'- caGUGGUGCGUGCUUG-GaCUUCacua -5'
23976 5' -52.4 NC_005262.1 + 13683 0.66 0.866877
Target:  5'- aUCA-CGCGCGCGGugCUGGcgcGUGAg -3'
miRNA:   3'- cAGUgGUGCGUGCUugGACUu--CACUa -5'
23976 5' -52.4 NC_005262.1 + 28490 0.66 0.858543
Target:  5'- aUgACCACGCGUG-ACCUGAuGUGGg -3'
miRNA:   3'- cAgUGGUGCGUGCuUGGACUuCACUa -5'
23976 5' -52.4 NC_005262.1 + 36360 0.66 0.849962
Target:  5'- cGUCGCCGCGCgcccACGcAUCUGcaucGGUGAc -3'
miRNA:   3'- -CAGUGGUGCG----UGCuUGGACu---UCACUa -5'
23976 5' -52.4 NC_005262.1 + 17495 0.66 0.847341
Target:  5'- -gCGCCGCGCGCGAcgcgucgaucggcaGCCUGAcgacGAUg -3'
miRNA:   3'- caGUGGUGCGUGCU--------------UGGACUuca-CUA- -5'
23976 5' -52.4 NC_005262.1 + 41366 0.66 0.841142
Target:  5'- uGUCGcCCACGCGCGGccgaAUCUGc-GUGAUc -3'
miRNA:   3'- -CAGU-GGUGCGUGCU----UGGACuuCACUA- -5'
23976 5' -52.4 NC_005262.1 + 59412 0.67 0.832093
Target:  5'- aUCGCaCGCGCaACGcucGACCUGAAGcUGGc -3'
miRNA:   3'- cAGUG-GUGCG-UGC---UUGGACUUC-ACUa -5'
23976 5' -52.4 NC_005262.1 + 27157 0.67 0.813347
Target:  5'- uGUCGCCgagcucGCGCACGAacgcguagcGCgUGAGGUcGAUg -3'
miRNA:   3'- -CAGUGG------UGCGUGCU---------UGgACUUCA-CUA- -5'
23976 5' -52.4 NC_005262.1 + 25927 0.67 0.813347
Target:  5'- cGUCGCCACGCGCGAcGCCg-------- -3'
miRNA:   3'- -CAGUGGUGCGUGCU-UGGacuucacua -5'
23976 5' -52.4 NC_005262.1 + 54562 0.68 0.783765
Target:  5'- cGUCGCCGCGUucGCGAGCgaGgcGcUGAa -3'
miRNA:   3'- -CAGUGGUGCG--UGCUUGgaCuuC-ACUa -5'
23976 5' -52.4 NC_005262.1 + 51787 0.68 0.77356
Target:  5'- cUCGCCGCGCACGAACgCgcucacAGUGu- -3'
miRNA:   3'- cAGUGGUGCGUGCUUG-Gacu---UCACua -5'
23976 5' -52.4 NC_005262.1 + 33878 0.68 0.742078
Target:  5'- cGUUGCC-CGCGCGAGCgaUGAGGUcGGUa -3'
miRNA:   3'- -CAGUGGuGCGUGCUUGg-ACUUCA-CUA- -5'
23976 5' -52.4 NC_005262.1 + 4514 0.69 0.731336
Target:  5'- -cUACCGCGCGgGAAUCUGggGg--- -3'
miRNA:   3'- caGUGGUGCGUgCUUGGACuuCacua -5'
23976 5' -52.4 NC_005262.1 + 60336 0.69 0.698536
Target:  5'- -aCGgCGCGCGCGGcuACCUGAAG-GAc -3'
miRNA:   3'- caGUgGUGCGUGCU--UGGACUUCaCUa -5'
23976 5' -52.4 NC_005262.1 + 53349 0.7 0.63143
Target:  5'- cUCGCCGacCGCGCGAACCUGAu----- -3'
miRNA:   3'- cAGUGGU--GCGUGCUUGGACUucacua -5'
23976 5' -52.4 NC_005262.1 + 54438 0.71 0.608949
Target:  5'- -cCGCCGCGCGCGccGACCgGAAGUa-- -3'
miRNA:   3'- caGUGGUGCGUGC--UUGGaCUUCAcua -5'
23976 5' -52.4 NC_005262.1 + 14234 0.72 0.514134
Target:  5'- uGUCgACCACGCACGAgcaggacgcagcgucGCCggagacgGAAGUGGc -3'
miRNA:   3'- -CAG-UGGUGCGUGCU---------------UGGa------CUUCACUa -5'
23976 5' -52.4 NC_005262.1 + 12137 0.73 0.475134
Target:  5'- aUCGCCGCGCugGAgagccagguuucgaACCUGAAGg--- -3'
miRNA:   3'- cAGUGGUGCGugCU--------------UGGACUUCacua -5'
23976 5' -52.4 NC_005262.1 + 5567 1.06 0.003482
Target:  5'- cGUCACCACGCACGAACCUGAAGUGAUc -3'
miRNA:   3'- -CAGUGGUGCGUGCUUGGACUUCACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.