Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23976 | 5' | -52.4 | NC_005262.1 | + | 33878 | 0.68 | 0.742078 |
Target: 5'- cGUUGCC-CGCGCGAGCgaUGAGGUcGGUa -3' miRNA: 3'- -CAGUGGuGCGUGCUUGg-ACUUCA-CUA- -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 51787 | 0.68 | 0.77356 |
Target: 5'- cUCGCCGCGCACGAACgCgcucacAGUGu- -3' miRNA: 3'- cAGUGGUGCGUGCUUG-Gacu---UCACua -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 27157 | 0.67 | 0.813347 |
Target: 5'- uGUCGCCgagcucGCGCACGAacgcguagcGCgUGAGGUcGAUg -3' miRNA: 3'- -CAGUGG------UGCGUGCU---------UGgACUUCA-CUA- -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 41366 | 0.66 | 0.841142 |
Target: 5'- uGUCGcCCACGCGCGGccgaAUCUGc-GUGAUc -3' miRNA: 3'- -CAGU-GGUGCGUGCU----UGGACuuCACUA- -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 36360 | 0.66 | 0.849962 |
Target: 5'- cGUCGCCGCGCgcccACGcAUCUGcaucGGUGAc -3' miRNA: 3'- -CAGUGGUGCG----UGCuUGGACu---UCACUa -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 23568 | 0.66 | 0.874955 |
Target: 5'- -cCGCCGCGCGCGGGCgCaGGAGa--- -3' miRNA: 3'- caGUGGUGCGUGCUUG-GaCUUCacua -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 13683 | 0.66 | 0.866877 |
Target: 5'- aUCA-CGCGCGCGGugCUGGcgcGUGAg -3' miRNA: 3'- cAGUgGUGCGUGCUugGACUu--CACUa -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 28490 | 0.66 | 0.858543 |
Target: 5'- aUgACCACGCGUG-ACCUGAuGUGGg -3' miRNA: 3'- cAgUGGUGCGUGCuUGGACUuCACUa -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 17495 | 0.66 | 0.847341 |
Target: 5'- -gCGCCGCGCGCGAcgcgucgaucggcaGCCUGAcgacGAUg -3' miRNA: 3'- caGUGGUGCGUGCU--------------UGGACUuca-CUA- -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 59412 | 0.67 | 0.832093 |
Target: 5'- aUCGCaCGCGCaACGcucGACCUGAAGcUGGc -3' miRNA: 3'- cAGUG-GUGCG-UGC---UUGGACUUC-ACUa -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 25927 | 0.67 | 0.813347 |
Target: 5'- cGUCGCCACGCGCGAcGCCg-------- -3' miRNA: 3'- -CAGUGGUGCGUGCU-UGGacuucacua -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 54562 | 0.68 | 0.783765 |
Target: 5'- cGUCGCCGCGUucGCGAGCgaGgcGcUGAa -3' miRNA: 3'- -CAGUGGUGCG--UGCUUGgaCuuC-ACUa -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 4514 | 0.69 | 0.731336 |
Target: 5'- -cUACCGCGCGgGAAUCUGggGg--- -3' miRNA: 3'- caGUGGUGCGUgCUUGGACuuCacua -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 60336 | 0.69 | 0.698536 |
Target: 5'- -aCGgCGCGCGCGGcuACCUGAAG-GAc -3' miRNA: 3'- caGUgGUGCGUGCU--UGGACUUCaCUa -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 53349 | 0.7 | 0.63143 |
Target: 5'- cUCGCCGacCGCGCGAACCUGAu----- -3' miRNA: 3'- cAGUGGU--GCGUGCUUGGACUucacua -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 54438 | 0.71 | 0.608949 |
Target: 5'- -cCGCCGCGCGCGccGACCgGAAGUa-- -3' miRNA: 3'- caGUGGUGCGUGC--UUGGaCUUCAcua -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 14234 | 0.72 | 0.514134 |
Target: 5'- uGUCgACCACGCACGAgcaggacgcagcgucGCCggagacgGAAGUGGc -3' miRNA: 3'- -CAG-UGGUGCGUGCU---------------UGGa------CUUCACUa -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 12137 | 0.73 | 0.475134 |
Target: 5'- aUCGCCGCGCugGAgagccagguuucgaACCUGAAGg--- -3' miRNA: 3'- cAGUGGUGCGugCU--------------UGGACUUCacua -5' |
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23976 | 5' | -52.4 | NC_005262.1 | + | 5567 | 1.06 | 0.003482 |
Target: 5'- cGUCACCACGCACGAACCUGAAGUGAUc -3' miRNA: 3'- -CAGUGGUGCGUGCUUGGACUUCACUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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