miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23977 3' -58.6 NC_005262.1 + 21607 0.66 0.591125
Target:  5'- cUCGCGGCgaacccugaCUGCCCgGAGU-GCGaCGg- -3'
miRNA:   3'- -AGCGCUG---------GACGGGgCUCAaCGC-GUag -5'
23977 3' -58.6 NC_005262.1 + 52643 0.66 0.591125
Target:  5'- gCGCGACC-GCa--GAGcagaacgUGCGCAUCg -3'
miRNA:   3'- aGCGCUGGaCGgggCUCa------ACGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 17175 0.66 0.591125
Target:  5'- cUCGCGGCCcGCCgCGucgacGGgcGCGCcuAUCg -3'
miRNA:   3'- -AGCGCUGGaCGGgGC-----UCaaCGCG--UAG- -5'
23977 3' -58.6 NC_005262.1 + 40381 0.66 0.574146
Target:  5'- gUCGaCGGCCUGUCugCCGcGUUcgcgcggauucagccGCGCGUCg -3'
miRNA:   3'- -AGC-GCUGGACGG--GGCuCAA---------------CGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 63730 0.66 0.569918
Target:  5'- gCGUGACgugUGCCUCGAGc--CGCGUCa -3'
miRNA:   3'- aGCGCUGg--ACGGGGCUCaacGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 31166 0.66 0.559383
Target:  5'- cCGCGGCUcGCCCUucaGGUcggcgaGCGCGUCg -3'
miRNA:   3'- aGCGCUGGaCGGGGc--UCAa-----CGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 56442 0.66 0.559383
Target:  5'- aCGCGAUCUGCUCgCGGGgcaCGCcgCc -3'
miRNA:   3'- aGCGCUGGACGGG-GCUCaacGCGuaG- -5'
23977 3' -58.6 NC_005262.1 + 10803 0.66 0.556233
Target:  5'- gCGCGAgCUGCCgCGAcgaucacgaccagcGcaUGCGCGUCc -3'
miRNA:   3'- aGCGCUgGACGGgGCU--------------Ca-ACGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 21433 0.66 0.538486
Target:  5'- gCGCGGCCUuggccGCCUCGAucgccuccuGgacgUGCGCGUa -3'
miRNA:   3'- aGCGCUGGA-----CGGGGCU---------Ca---ACGCGUAg -5'
23977 3' -58.6 NC_005262.1 + 37410 0.66 0.538486
Target:  5'- gCGCGaACCUG-CuuGGGUUGCagcucuaucGCGUCg -3'
miRNA:   3'- aGCGC-UGGACgGggCUCAACG---------CGUAG- -5'
23977 3' -58.6 NC_005262.1 + 35850 0.66 0.538486
Target:  5'- cCGCGACC-GCCCaGAuGUuugUGCGCGg- -3'
miRNA:   3'- aGCGCUGGaCGGGgCU-CA---ACGCGUag -5'
23977 3' -58.6 NC_005262.1 + 60589 0.66 0.538486
Target:  5'- -gGCGGCCUGCgCCGcGcgGCccgGCGUCu -3'
miRNA:   3'- agCGCUGGACGgGGCuCaaCG---CGUAG- -5'
23977 3' -58.6 NC_005262.1 + 30441 0.67 0.528136
Target:  5'- gUCGuUGACCUGCCCC-AGccaCGCAUUc -3'
miRNA:   3'- -AGC-GCUGGACGGGGcUCaacGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 62036 0.67 0.528136
Target:  5'- gCGCGAuCCUccuCCUCGAuGcgGCGCAUCg -3'
miRNA:   3'- aGCGCU-GGAc--GGGGCU-CaaCGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 57621 0.67 0.517862
Target:  5'- aUCGCGACaacaUGa-CCGGuaUGCGCGUCg -3'
miRNA:   3'- -AGCGCUGg---ACggGGCUcaACGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 55306 0.67 0.517862
Target:  5'- gCGCGGCCUGCgCgaCGAagcgacggcgGUUGUGCGUg -3'
miRNA:   3'- aGCGCUGGACG-Gg-GCU----------CAACGCGUAg -5'
23977 3' -58.6 NC_005262.1 + 45194 0.67 0.517862
Target:  5'- uUCGCGGCac-CCgCCGAGUUgaGCGCgGUCa -3'
miRNA:   3'- -AGCGCUGgacGG-GGCUCAA--CGCG-UAG- -5'
23977 3' -58.6 NC_005262.1 + 21763 0.67 0.517862
Target:  5'- gCGCGGC--GCCgCCGcucaGGUUGCGCGUg -3'
miRNA:   3'- aGCGCUGgaCGG-GGC----UCAACGCGUAg -5'
23977 3' -58.6 NC_005262.1 + 49851 0.67 0.497559
Target:  5'- -aGCGGCCggaGCCUCGGGcgcggGCGCcgCc -3'
miRNA:   3'- agCGCUGGa--CGGGGCUCaa---CGCGuaG- -5'
23977 3' -58.6 NC_005262.1 + 45104 0.67 0.497559
Target:  5'- cUCGCcAUCUGCCgCGuGUUG-GCGUCc -3'
miRNA:   3'- -AGCGcUGGACGGgGCuCAACgCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.