Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23977 | 3' | -58.6 | NC_005262.1 | + | 5623 | 0.92 | 0.010071 |
Target: 5'- uUCGCGACCU-CgCCCGAGUUGCGCAUCa -3' miRNA: 3'- -AGCGCUGGAcG-GGGCUCAACGCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 23923 | 0.74 | 0.188395 |
Target: 5'- -gGCGGCgUGCCggccuacguugCCGAGUaccUGCGCGUCg -3' miRNA: 3'- agCGCUGgACGG-----------GGCUCA---ACGCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 15142 | 0.74 | 0.193382 |
Target: 5'- aUCGCGGCCgGCgUCGAGUcgGCGCGg- -3' miRNA: 3'- -AGCGCUGGaCGgGGCUCAa-CGCGUag -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 18022 | 0.73 | 0.225782 |
Target: 5'- aUCGCGACCUGCUCgccGUUG-GCGUCg -3' miRNA: 3'- -AGCGCUGGACGGGgcuCAACgCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 54505 | 0.71 | 0.289891 |
Target: 5'- -gGCGGCCUGCgCCuccgCGAGcUUGCGCAc- -3' miRNA: 3'- agCGCUGGACG-GG----GCUC-AACGCGUag -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 12629 | 0.71 | 0.297033 |
Target: 5'- cCGCGACCUGCCgCCGcaacauggAGgcgauCGCGUCg -3' miRNA: 3'- aGCGCUGGACGG-GGC--------UCaac--GCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 10789 | 0.71 | 0.311725 |
Target: 5'- cCGCGugCgcgcgGCCUCGAucUGCGCAUg -3' miRNA: 3'- aGCGCugGa----CGGGGCUcaACGCGUAg -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 61228 | 0.7 | 0.319275 |
Target: 5'- cCGCGAUCUGCUgCGcca-GCGCGUCg -3' miRNA: 3'- aGCGCUGGACGGgGCucaaCGCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 6152 | 0.7 | 0.334784 |
Target: 5'- cCGCGGCCUGacgcaaCCCCGuGgUGCgGUAUCg -3' miRNA: 3'- aGCGCUGGAC------GGGGCuCaACG-CGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 51622 | 0.7 | 0.342743 |
Target: 5'- aCGCGAgCCgGUCgCCGuGUUGCGCAcggUCg -3' miRNA: 3'- aGCGCU-GGaCGG-GGCuCAACGCGU---AG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 10348 | 0.69 | 0.367431 |
Target: 5'- -gGCGcAUCUGUCUacauCGAGggGCGCAUCa -3' miRNA: 3'- agCGC-UGGACGGG----GCUCaaCGCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 48382 | 0.69 | 0.375927 |
Target: 5'- gCGCaGGCCgGCCUCGAgGUUGUuccaaGCAUCg -3' miRNA: 3'- aGCG-CUGGaCGGGGCU-CAACG-----CGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 5198 | 0.69 | 0.384555 |
Target: 5'- gCGCGGCCgGCgcgaCCGAGg-GCGUAUCc -3' miRNA: 3'- aGCGCUGGaCGg---GGCUCaaCGCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 31811 | 0.69 | 0.40579 |
Target: 5'- aUGCGACCgccgGCCgaaaCCGAGUgacgcacuuggucgaUGCGCAcuUCg -3' miRNA: 3'- aGCGCUGGa---CGG----GGCUCA---------------ACGCGU--AG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 47526 | 0.68 | 0.429609 |
Target: 5'- uUCGCGACCuUGUUCUGcuGGUucUGgGCGUCg -3' miRNA: 3'- -AGCGCUGG-ACGGGGC--UCA--ACgCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 53149 | 0.68 | 0.448481 |
Target: 5'- uUCGCGAUC-GCgCCGGucaGCGCGUCg -3' miRNA: 3'- -AGCGCUGGaCGgGGCUcaaCGCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 41100 | 0.68 | 0.448481 |
Target: 5'- aCGCcGCCgGCCacguCGAGaucgUGCGCGUCa -3' miRNA: 3'- aGCGcUGGaCGGg---GCUCa---ACGCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 51872 | 0.68 | 0.458087 |
Target: 5'- aCGUGACa-GCCUgGAccUGCGCAUCg -3' miRNA: 3'- aGCGCUGgaCGGGgCUcaACGCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 28258 | 0.68 | 0.467802 |
Target: 5'- gUCGaCGGCC-GCCgCGcgcAGUUGCGCcgCg -3' miRNA: 3'- -AGC-GCUGGaCGGgGC---UCAACGCGuaG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 4681 | 0.67 | 0.477622 |
Target: 5'- cCGCGGCCggaucggGCCgCGGcauccagucGUUGCGCAa- -3' miRNA: 3'- aGCGCUGGa------CGGgGCU---------CAACGCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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