miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23977 3' -58.6 NC_005262.1 + 4681 0.67 0.477622
Target:  5'- cCGCGGCCggaucggGCCgCGGcauccagucGUUGCGCAa- -3'
miRNA:   3'- aGCGCUGGa------CGGgGCU---------CAACGCGUag -5'
23977 3' -58.6 NC_005262.1 + 5198 0.69 0.384555
Target:  5'- gCGCGGCCgGCgcgaCCGAGg-GCGUAUCc -3'
miRNA:   3'- aGCGCUGGaCGg---GGCUCaaCGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 5623 0.92 0.010071
Target:  5'- uUCGCGACCU-CgCCCGAGUUGCGCAUCa -3'
miRNA:   3'- -AGCGCUGGAcG-GGGCUCAACGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 6152 0.7 0.334784
Target:  5'- cCGCGGCCUGacgcaaCCCCGuGgUGCgGUAUCg -3'
miRNA:   3'- aGCGCUGGAC------GGGGCuCaACG-CGUAG- -5'
23977 3' -58.6 NC_005262.1 + 10348 0.69 0.367431
Target:  5'- -gGCGcAUCUGUCUacauCGAGggGCGCAUCa -3'
miRNA:   3'- agCGC-UGGACGGG----GCUCaaCGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 10789 0.71 0.311725
Target:  5'- cCGCGugCgcgcgGCCUCGAucUGCGCAUg -3'
miRNA:   3'- aGCGCugGa----CGGGGCUcaACGCGUAg -5'
23977 3' -58.6 NC_005262.1 + 10803 0.66 0.556233
Target:  5'- gCGCGAgCUGCCgCGAcgaucacgaccagcGcaUGCGCGUCc -3'
miRNA:   3'- aGCGCUgGACGGgGCU--------------Ca-ACGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 12629 0.71 0.297033
Target:  5'- cCGCGACCUGCCgCCGcaacauggAGgcgauCGCGUCg -3'
miRNA:   3'- aGCGCUGGACGG-GGC--------UCaac--GCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 15142 0.74 0.193382
Target:  5'- aUCGCGGCCgGCgUCGAGUcgGCGCGg- -3'
miRNA:   3'- -AGCGCUGGaCGgGGCUCAa-CGCGUag -5'
23977 3' -58.6 NC_005262.1 + 17175 0.66 0.591125
Target:  5'- cUCGCGGCCcGCCgCGucgacGGgcGCGCcuAUCg -3'
miRNA:   3'- -AGCGCUGGaCGGgGC-----UCaaCGCG--UAG- -5'
23977 3' -58.6 NC_005262.1 + 18022 0.73 0.225782
Target:  5'- aUCGCGACCUGCUCgccGUUG-GCGUCg -3'
miRNA:   3'- -AGCGCUGGACGGGgcuCAACgCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 21433 0.66 0.538486
Target:  5'- gCGCGGCCUuggccGCCUCGAucgccuccuGgacgUGCGCGUa -3'
miRNA:   3'- aGCGCUGGA-----CGGGGCU---------Ca---ACGCGUAg -5'
23977 3' -58.6 NC_005262.1 + 21607 0.66 0.591125
Target:  5'- cUCGCGGCgaacccugaCUGCCCgGAGU-GCGaCGg- -3'
miRNA:   3'- -AGCGCUG---------GACGGGgCUCAaCGC-GUag -5'
23977 3' -58.6 NC_005262.1 + 21763 0.67 0.517862
Target:  5'- gCGCGGC--GCCgCCGcucaGGUUGCGCGUg -3'
miRNA:   3'- aGCGCUGgaCGG-GGC----UCAACGCGUAg -5'
23977 3' -58.6 NC_005262.1 + 23923 0.74 0.188395
Target:  5'- -gGCGGCgUGCCggccuacguugCCGAGUaccUGCGCGUCg -3'
miRNA:   3'- agCGCUGgACGG-----------GGCUCA---ACGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 28258 0.68 0.467802
Target:  5'- gUCGaCGGCC-GCCgCGcgcAGUUGCGCcgCg -3'
miRNA:   3'- -AGC-GCUGGaCGGgGC---UCAACGCGuaG- -5'
23977 3' -58.6 NC_005262.1 + 30441 0.67 0.528136
Target:  5'- gUCGuUGACCUGCCCC-AGccaCGCAUUc -3'
miRNA:   3'- -AGC-GCUGGACGGGGcUCaacGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 31166 0.66 0.559383
Target:  5'- cCGCGGCUcGCCCUucaGGUcggcgaGCGCGUCg -3'
miRNA:   3'- aGCGCUGGaCGGGGc--UCAa-----CGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 31811 0.69 0.40579
Target:  5'- aUGCGACCgccgGCCgaaaCCGAGUgacgcacuuggucgaUGCGCAcuUCg -3'
miRNA:   3'- aGCGCUGGa---CGG----GGCUCA---------------ACGCGU--AG- -5'
23977 3' -58.6 NC_005262.1 + 35850 0.66 0.538486
Target:  5'- cCGCGACC-GCCCaGAuGUuugUGCGCGg- -3'
miRNA:   3'- aGCGCUGGaCGGGgCU-CA---ACGCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.