Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23977 | 3' | -58.6 | NC_005262.1 | + | 48382 | 0.69 | 0.375927 |
Target: 5'- gCGCaGGCCgGCCUCGAgGUUGUuccaaGCAUCg -3' miRNA: 3'- aGCG-CUGGaCGGGGCU-CAACG-----CGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 51622 | 0.7 | 0.342743 |
Target: 5'- aCGCGAgCCgGUCgCCGuGUUGCGCAcggUCg -3' miRNA: 3'- aGCGCU-GGaCGG-GGCuCAACGCGU---AG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 6152 | 0.7 | 0.334784 |
Target: 5'- cCGCGGCCUGacgcaaCCCCGuGgUGCgGUAUCg -3' miRNA: 3'- aGCGCUGGAC------GGGGCuCaACG-CGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 61228 | 0.7 | 0.319275 |
Target: 5'- cCGCGAUCUGCUgCGcca-GCGCGUCg -3' miRNA: 3'- aGCGCUGGACGGgGCucaaCGCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 10789 | 0.71 | 0.311725 |
Target: 5'- cCGCGugCgcgcgGCCUCGAucUGCGCAUg -3' miRNA: 3'- aGCGCugGa----CGGGGCUcaACGCGUAg -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 12629 | 0.71 | 0.297033 |
Target: 5'- cCGCGACCUGCCgCCGcaacauggAGgcgauCGCGUCg -3' miRNA: 3'- aGCGCUGGACGG-GGC--------UCaac--GCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 54505 | 0.71 | 0.289891 |
Target: 5'- -gGCGGCCUGCgCCuccgCGAGcUUGCGCAc- -3' miRNA: 3'- agCGCUGGACG-GG----GCUC-AACGCGUag -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 56120 | 0.67 | 0.477622 |
Target: 5'- cUGCGGCggGCCCUugcGGUUGCGgAUCg -3' miRNA: 3'- aGCGCUGgaCGGGGc--UCAACGCgUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 48632 | 0.67 | 0.487543 |
Target: 5'- -aGCGGCCcgGCUCC----UGCGCAUCg -3' miRNA: 3'- agCGCUGGa-CGGGGcucaACGCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 31166 | 0.66 | 0.559383 |
Target: 5'- cCGCGGCUcGCCCUucaGGUcggcgaGCGCGUCg -3' miRNA: 3'- aGCGCUGGaCGGGGc--UCAa-----CGCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 56442 | 0.66 | 0.559383 |
Target: 5'- aCGCGAUCUGCUCgCGGGgcaCGCcgCc -3' miRNA: 3'- aGCGCUGGACGGG-GCUCaacGCGuaG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 21433 | 0.66 | 0.538486 |
Target: 5'- gCGCGGCCUuggccGCCUCGAucgccuccuGgacgUGCGCGUa -3' miRNA: 3'- aGCGCUGGA-----CGGGGCU---------Ca---ACGCGUAg -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 60589 | 0.66 | 0.538486 |
Target: 5'- -gGCGGCCUGCgCCGcGcgGCccgGCGUCu -3' miRNA: 3'- agCGCUGGACGgGGCuCaaCG---CGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 30441 | 0.67 | 0.528136 |
Target: 5'- gUCGuUGACCUGCCCC-AGccaCGCAUUc -3' miRNA: 3'- -AGC-GCUGGACGGGGcUCaacGCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 21763 | 0.67 | 0.517862 |
Target: 5'- gCGCGGC--GCCgCCGcucaGGUUGCGCGUg -3' miRNA: 3'- aGCGCUGgaCGG-GGC----UCAACGCGUAg -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 45194 | 0.67 | 0.517862 |
Target: 5'- uUCGCGGCac-CCgCCGAGUUgaGCGCgGUCa -3' miRNA: 3'- -AGCGCUGgacGG-GGCUCAA--CGCG-UAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 55306 | 0.67 | 0.517862 |
Target: 5'- gCGCGGCCUGCgCgaCGAagcgacggcgGUUGUGCGUg -3' miRNA: 3'- aGCGCUGGACG-Gg-GCU----------CAACGCGUAg -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 45104 | 0.67 | 0.497559 |
Target: 5'- cUCGCcAUCUGCCgCGuGUUG-GCGUCc -3' miRNA: 3'- -AGCGcUGGACGGgGCuCAACgCGUAG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 49851 | 0.67 | 0.497559 |
Target: 5'- -aGCGGCCggaGCCUCGGGcgcggGCGCcgCc -3' miRNA: 3'- agCGCUGGa--CGGGGCUCaa---CGCGuaG- -5' |
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23977 | 3' | -58.6 | NC_005262.1 | + | 54554 | 0.67 | 0.487543 |
Target: 5'- cCGCGAgCagcGCCUCGAcGUUGCGCu-- -3' miRNA: 3'- aGCGCUgGa--CGGGGCU-CAACGCGuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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