miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23977 3' -58.6 NC_005262.1 + 21763 0.67 0.517862
Target:  5'- gCGCGGC--GCCgCCGcucaGGUUGCGCGUg -3'
miRNA:   3'- aGCGCUGgaCGG-GGC----UCAACGCGUAg -5'
23977 3' -58.6 NC_005262.1 + 47526 0.68 0.429609
Target:  5'- uUCGCGACCuUGUUCUGcuGGUucUGgGCGUCg -3'
miRNA:   3'- -AGCGCUGG-ACGGGGC--UCA--ACgCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 48382 0.69 0.375927
Target:  5'- gCGCaGGCCgGCCUCGAgGUUGUuccaaGCAUCg -3'
miRNA:   3'- aGCG-CUGGaCGGGGCU-CAACG-----CGUAG- -5'
23977 3' -58.6 NC_005262.1 + 23923 0.74 0.188395
Target:  5'- -gGCGGCgUGCCggccuacguugCCGAGUaccUGCGCGUCg -3'
miRNA:   3'- agCGCUGgACGG-----------GGCUCA---ACGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 17175 0.66 0.591125
Target:  5'- cUCGCGGCCcGCCgCGucgacGGgcGCGCcuAUCg -3'
miRNA:   3'- -AGCGCUGGaCGGgGC-----UCaaCGCG--UAG- -5'
23977 3' -58.6 NC_005262.1 + 31166 0.66 0.559383
Target:  5'- cCGCGGCUcGCCCUucaGGUcggcgaGCGCGUCg -3'
miRNA:   3'- aGCGCUGGaCGGGGc--UCAa-----CGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 56442 0.66 0.559383
Target:  5'- aCGCGAUCUGCUCgCGGGgcaCGCcgCc -3'
miRNA:   3'- aGCGCUGGACGGG-GCUCaacGCGuaG- -5'
23977 3' -58.6 NC_005262.1 + 21433 0.66 0.538486
Target:  5'- gCGCGGCCUuggccGCCUCGAucgccuccuGgacgUGCGCGUa -3'
miRNA:   3'- aGCGCUGGA-----CGGGGCU---------Ca---ACGCGUAg -5'
23977 3' -58.6 NC_005262.1 + 60589 0.66 0.538486
Target:  5'- -gGCGGCCUGCgCCGcGcgGCccgGCGUCu -3'
miRNA:   3'- agCGCUGGACGgGGCuCaaCG---CGUAG- -5'
23977 3' -58.6 NC_005262.1 + 53149 0.68 0.448481
Target:  5'- uUCGCGAUC-GCgCCGGucaGCGCGUCg -3'
miRNA:   3'- -AGCGCUGGaCGgGGCUcaaCGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 56120 0.67 0.477622
Target:  5'- cUGCGGCggGCCCUugcGGUUGCGgAUCg -3'
miRNA:   3'- aGCGCUGgaCGGGGc--UCAACGCgUAG- -5'
23977 3' -58.6 NC_005262.1 + 48632 0.67 0.487543
Target:  5'- -aGCGGCCcgGCUCC----UGCGCAUCg -3'
miRNA:   3'- agCGCUGGa-CGGGGcucaACGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 45194 0.67 0.517862
Target:  5'- uUCGCGGCac-CCgCCGAGUUgaGCGCgGUCa -3'
miRNA:   3'- -AGCGCUGgacGG-GGCUCAA--CGCG-UAG- -5'
23977 3' -58.6 NC_005262.1 + 28258 0.68 0.467802
Target:  5'- gUCGaCGGCC-GCCgCGcgcAGUUGCGCcgCg -3'
miRNA:   3'- -AGC-GCUGGaCGGgGC---UCAACGCGuaG- -5'
23977 3' -58.6 NC_005262.1 + 55306 0.67 0.517862
Target:  5'- gCGCGGCCUGCgCgaCGAagcgacggcgGUUGUGCGUg -3'
miRNA:   3'- aGCGCUGGACG-Gg-GCU----------CAACGCGUAg -5'
23977 3' -58.6 NC_005262.1 + 54554 0.67 0.487543
Target:  5'- cCGCGAgCagcGCCUCGAcGUUGCGCu-- -3'
miRNA:   3'- aGCGCUgGa--CGGGGCU-CAACGCGuag -5'
23977 3' -58.6 NC_005262.1 + 51872 0.68 0.458087
Target:  5'- aCGUGACa-GCCUgGAccUGCGCAUCg -3'
miRNA:   3'- aGCGCUGgaCGGGgCUcaACGCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 31811 0.69 0.40579
Target:  5'- aUGCGACCgccgGCCgaaaCCGAGUgacgcacuuggucgaUGCGCAcuUCg -3'
miRNA:   3'- aGCGCUGGa---CGG----GGCUCA---------------ACGCGU--AG- -5'
23977 3' -58.6 NC_005262.1 + 45104 0.67 0.497559
Target:  5'- cUCGCcAUCUGCCgCGuGUUG-GCGUCc -3'
miRNA:   3'- -AGCGcUGGACGGgGCuCAACgCGUAG- -5'
23977 3' -58.6 NC_005262.1 + 49851 0.67 0.497559
Target:  5'- -aGCGGCCggaGCCUCGGGcgcggGCGCcgCc -3'
miRNA:   3'- agCGCUGGa--CGGGGCUCaa---CGCGuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.