miRNA display CGI


Results 41 - 60 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 50840 0.66 0.41748
Target:  5'- cACGCUCGGCaucccgcgCGCAgaaaUGCCGCaggUGCCGa -3'
miRNA:   3'- uUGUGGGCCG--------GCGU----ACGGCG---AUGGCg -5'
23978 3' -60.9 NC_005262.1 + 20452 0.66 0.41748
Target:  5'- cGGCACCgucGCCGCGUggGCUGUU-CCGCa -3'
miRNA:   3'- -UUGUGGgc-CGGCGUA--CGGCGAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 62401 0.66 0.41748
Target:  5'- uAGCGCCCGcCCGCGgauugugguuaUGUaaCGCaACCGCg -3'
miRNA:   3'- -UUGUGGGCcGGCGU-----------ACG--GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 36054 0.67 0.373669
Target:  5'- uACGCCCGGUac--UGCCaacCUGCCGCa -3'
miRNA:   3'- uUGUGGGCCGgcguACGGc--GAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48633 0.67 0.365289
Target:  5'- --aGCCCGGCCGCuucaagGUGCUGa---CGCa -3'
miRNA:   3'- uugUGGGCCGGCG------UACGGCgaugGCG- -5'
23978 3' -60.9 NC_005262.1 + 28355 0.67 0.365289
Target:  5'- cAGCGCCUcaagGGCCGCAacuCCGaCUuCCGCg -3'
miRNA:   3'- -UUGUGGG----CCGGCGUac-GGC-GAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 31734 0.67 0.365289
Target:  5'- --gGCCggCGGUCGCAUGUCGCgcaAgCGCa -3'
miRNA:   3'- uugUGG--GCCGGCGUACGGCGa--UgGCG- -5'
23978 3' -60.9 NC_005262.1 + 60177 0.67 0.35704
Target:  5'- aGGCGCUCGGCCaGUggGCgGCaACCGg -3'
miRNA:   3'- -UUGUGGGCCGG-CGuaCGgCGaUGGCg -5'
23978 3' -60.9 NC_005262.1 + 51364 0.67 0.400464
Target:  5'- cAGCAgCCGGCgGCcggugagguucagcuUGCCGUccuUACCGUa -3'
miRNA:   3'- -UUGUgGGCCGgCGu--------------ACGGCG---AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 46725 0.67 0.39958
Target:  5'- cGCugUCGGCCaucaGCGUGCC-CUucAUCGCg -3'
miRNA:   3'- uUGugGGCCGG----CGUACGGcGA--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 23132 0.67 0.390816
Target:  5'- -cCACCCGuucGCCGCA--CCGCgcuucgcaUACCGCu -3'
miRNA:   3'- uuGUGGGC---CGGCGUacGGCG--------AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 53372 0.67 0.373669
Target:  5'- cGGCGCCauG-CGCcUGCCGCagACCGCg -3'
miRNA:   3'- -UUGUGGgcCgGCGuACGGCGa-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22132 0.67 0.373669
Target:  5'- cGGCAaucgUCUGGCCGCc-GCgGCUGcCCGCa -3'
miRNA:   3'- -UUGU----GGGCCGGCGuaCGgCGAU-GGCG- -5'
23978 3' -60.9 NC_005262.1 + 50276 0.67 0.382179
Target:  5'- cGCGCCCGcGCCgGCcgaGcCCGUgacgGCCGCg -3'
miRNA:   3'- uUGUGGGC-CGG-CGua-C-GGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 50316 0.67 0.383037
Target:  5'- gAGgAgCCGGCCGCAgcgcccGCCGCgcaggacgaagcgcCCGCg -3'
miRNA:   3'- -UUgUgGGCCGGCGUa-----CGGCGau------------GGCG- -5'
23978 3' -60.9 NC_005262.1 + 51187 0.67 0.373669
Target:  5'- cGACgACgCGGCgGCccGCUGgaGCCGCg -3'
miRNA:   3'- -UUG-UGgGCCGgCGuaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 47713 0.67 0.387346
Target:  5'- cGCGCCgGGCgGCGgcucGCCGCcuguaucuggugcGCCGCc -3'
miRNA:   3'- uUGUGGgCCGgCGUa---CGGCGa------------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 3838 0.67 0.390816
Target:  5'- gAGCGCCCcGCgCGUgacGUGCCGCUgaugguagGCCGa -3'
miRNA:   3'- -UUGUGGGcCG-GCG---UACGGCGA--------UGGCg -5'
23978 3' -60.9 NC_005262.1 + 16403 0.67 0.39958
Target:  5'- -cCGgCCGGCCGCcgGgauuCUGC-GCCGCg -3'
miRNA:   3'- uuGUgGGCCGGCGuaC----GGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 15893 0.67 0.373669
Target:  5'- --gAUCC-GCCGCGUGCgCGCgacguggcGCCGCg -3'
miRNA:   3'- uugUGGGcCGGCGUACG-GCGa-------UGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.