miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 60290 0.67 0.373669
Target:  5'- cGACcuCgCCGGCCgGCuccuUGCCGgUUGCCGCc -3'
miRNA:   3'- -UUGu-G-GGCCGG-CGu---ACGGC-GAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 40425 0.67 0.382179
Target:  5'- cAGCGCgCCGGCCGUGaGCCGaUGCUcgaaGCg -3'
miRNA:   3'- -UUGUG-GGCCGGCGUaCGGCgAUGG----CG- -5'
23978 3' -60.9 NC_005262.1 + 19523 0.67 0.382179
Target:  5'- cAACGCCCaG-CGCuucagAUGCCGCgACUGCg -3'
miRNA:   3'- -UUGUGGGcCgGCG-----UACGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 53895 0.67 0.385619
Target:  5'- cGAUGCCCGuGCCGCugucgaccugcaucaGguUGCCGgUAUCGCc -3'
miRNA:   3'- -UUGUGGGC-CGGCG---------------U--ACGGCgAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 45426 0.67 0.390816
Target:  5'- gGACGCCCGcGCCGCcuUGCagaccuugcauCGC-GCCGUu -3'
miRNA:   3'- -UUGUGGGC-CGGCGu-ACG-----------GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 21810 0.67 0.390816
Target:  5'- gAGCGCCUugaGGCCGUccuUGCCGau-CUGCg -3'
miRNA:   3'- -UUGUGGG---CCGGCGu--ACGGCgauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 41454 0.67 0.39958
Target:  5'- -uCAgCCGuGCCGUucGUGCCGU--CCGCg -3'
miRNA:   3'- uuGUgGGC-CGGCG--UACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 46725 0.67 0.39958
Target:  5'- cGCugUCGGCCaucaGCGUGCC-CUucAUCGCg -3'
miRNA:   3'- uUGugGGCCGG----CGUACGGcGA--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 25480 0.67 0.373669
Target:  5'- cAGCGCCuCGGCCGUcucccgauccUGCgCGaugaUGCCGCa -3'
miRNA:   3'- -UUGUGG-GCCGGCGu---------ACG-GCg---AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 53703 0.67 0.365289
Target:  5'- cGACGCCCGGCuCGggaacgacCGUGUacuCGUUugCGCg -3'
miRNA:   3'- -UUGUGGGCCG-GC--------GUACG---GCGAugGCG- -5'
23978 3' -60.9 NC_005262.1 + 51364 0.67 0.400464
Target:  5'- cAGCAgCCGGCgGCcggugagguucagcuUGCCGUccuUACCGUa -3'
miRNA:   3'- -UUGUgGGCCGgCGu--------------ACGGCG---AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 7289 0.67 0.35704
Target:  5'- aAACACCCGGUCuuacaAUGCaauCGC-GCCGCa -3'
miRNA:   3'- -UUGUGGGCCGGcg---UACG---GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 12362 0.67 0.35704
Target:  5'- --aGCUCGGCuCGCcgGCCGCgAUCGa -3'
miRNA:   3'- uugUGGGCCG-GCGuaCGGCGaUGGCg -5'
23978 3' -60.9 NC_005262.1 + 27920 0.67 0.35704
Target:  5'- cAGCACcuugaagucagaCCGGCCGCGcuucUCGCUACCGa -3'
miRNA:   3'- -UUGUG------------GGCCGGCGUac--GGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 34605 0.67 0.360324
Target:  5'- aAACGCCaCaGCCGCGUcgucucgcagaagucGCgCGCcGCCGCg -3'
miRNA:   3'- -UUGUGG-GcCGGCGUA---------------CG-GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 61251 0.67 0.364459
Target:  5'- cGCGCCCGucaGCuCGCccGCCGCcgcgaucUGCUGCg -3'
miRNA:   3'- uUGUGGGC---CG-GCGuaCGGCG-------AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 58526 0.68 0.340937
Target:  5'- -cCGCCCuGCC-CGUGCUGCUGCaCGa -3'
miRNA:   3'- uuGUGGGcCGGcGUACGGCGAUG-GCg -5'
23978 3' -60.9 NC_005262.1 + 58970 0.68 0.340937
Target:  5'- -cCAgCCGGCCGCcgGCgGCcucacgccucCCGCg -3'
miRNA:   3'- uuGUgGGCCGGCGuaCGgCGau--------GGCG- -5'
23978 3' -60.9 NC_005262.1 + 1121 0.68 0.340937
Target:  5'- -cCGCCucuugcucugCGGCCGC-UGCgggcuucgaUGCUGCCGCg -3'
miRNA:   3'- uuGUGG----------GCCGGCGuACG---------GCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 23845 0.68 0.340937
Target:  5'- --aGgCCGGCaCGCcgcccuUGCCGgUGCCGCc -3'
miRNA:   3'- uugUgGGCCG-GCGu-----ACGGCgAUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.