miRNA display CGI


Results 101 - 120 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 31622 0.68 0.340937
Target:  5'- uGCACCUGcGCgGCAaGCCGacCUACgGCg -3'
miRNA:   3'- uUGUGGGC-CGgCGUaCGGC--GAUGgCG- -5'
23978 3' -60.9 NC_005262.1 + 3349 0.68 0.340937
Target:  5'- gAugACgaGGCCGCG-GCuCGCUagauGCCGCa -3'
miRNA:   3'- -UugUGggCCGGCGUaCG-GCGA----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 34967 0.68 0.340937
Target:  5'- cGGCGCUCGGCCGCAaGUCGaaGCUccagGCa -3'
miRNA:   3'- -UUGUGGGCCGGCGUaCGGCgaUGG----CG- -5'
23978 3' -60.9 NC_005262.1 + 58970 0.68 0.340937
Target:  5'- -cCAgCCGGCCGCcgGCgGCcucacgccucCCGCg -3'
miRNA:   3'- uuGUgGGCCGGCGuaCGgCGau--------GGCG- -5'
23978 3' -60.9 NC_005262.1 + 48127 0.68 0.317782
Target:  5'- cGCGCUugCGGgCGCG-GCCgGCUGCUGCg -3'
miRNA:   3'- uUGUGG--GCCgGCGUaCGG-CGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 45103 0.68 0.317782
Target:  5'- -uCGCCaucuGCCGCGUguuggcguccGCCGcCUGCCGCg -3'
miRNA:   3'- uuGUGGgc--CGGCGUA----------CGGC-GAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 1121 0.68 0.340937
Target:  5'- -cCGCCucuugcucugCGGCCGC-UGCgggcuucgaUGCUGCCGCg -3'
miRNA:   3'- uuGUGG----------GCCGGCGuACG---------GCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 58526 0.68 0.340937
Target:  5'- -cCGCCCuGCC-CGUGCUGCUGCaCGa -3'
miRNA:   3'- uuGUGGGcCGGcGUACGGCGAUG-GCg -5'
23978 3' -60.9 NC_005262.1 + 20575 0.68 0.317782
Target:  5'- gAGCAgCCCGGCgaGCA-GCgCGCggcgcGCCGCa -3'
miRNA:   3'- -UUGU-GGGCCGg-CGUaCG-GCGa----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 34042 0.69 0.300844
Target:  5'- cGACGCCgCGuuccgggaucgcuuGCCGCGUGCC-C-GCCGCg -3'
miRNA:   3'- -UUGUGG-GC--------------CGGCGUACGGcGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 65 0.69 0.303013
Target:  5'- gGAgGCCgCGGCuCGCGaagaagucgGCCGC-GCCGCa -3'
miRNA:   3'- -UUgUGG-GCCG-GCGUa--------CGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 42991 0.69 0.271065
Target:  5'- cGCGCCgGGCCGCuucguGUcgggccaguucuucgGCCGCUACCu- -3'
miRNA:   3'- uUGUGGgCCGGCG-----UA---------------CGGCGAUGGcg -5'
23978 3' -60.9 NC_005262.1 + 1473 0.69 0.288778
Target:  5'- -cCGCCCGcUCGUcUGCCggcGCUGCCGCu -3'
miRNA:   3'- uuGUGGGCcGGCGuACGG---CGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 12319 0.69 0.275074
Target:  5'- cGGCAUgCGGCU-CGUGCCGCaGCgCGCg -3'
miRNA:   3'- -UUGUGgGCCGGcGUACGGCGaUG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 57172 0.69 0.28186
Target:  5'- cGGCgACCCcucGCCGCucGUGUCGCUcCCGCu -3'
miRNA:   3'- -UUG-UGGGc--CGGCG--UACGGCGAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 11486 0.69 0.295829
Target:  5'- gAGCACaUgGGCCGCGUcGCCGagcucgGCUGCa -3'
miRNA:   3'- -UUGUG-GgCCGGCGUA-CGGCga----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 45112 0.69 0.295829
Target:  5'- --aACUCGG-CGgGUGCCGCgaacACCGCg -3'
miRNA:   3'- uugUGGGCCgGCgUACGGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 12554 0.69 0.295829
Target:  5'- cGGCAggUCgCGGCgGCGcucgucgagcUGCUGCUGCCGCc -3'
miRNA:   3'- -UUGU--GG-GCCGgCGU----------ACGGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 49606 0.69 0.303013
Target:  5'- -uCGCUCGGCCGCGacGUCGCUaACCagGCg -3'
miRNA:   3'- uuGUGGGCCGGCGUa-CGGCGA-UGG--CG- -5'
23978 3' -60.9 NC_005262.1 + 6226 0.69 0.300844
Target:  5'- cAGCAaaauCCCGGCCGCgcAcaucgaggcgacugUGCCGCcguuCCGCa -3'
miRNA:   3'- -UUGU----GGGCCGGCG--U--------------ACGGCGau--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.