miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 11486 0.69 0.295829
Target:  5'- gAGCACaUgGGCCGCGUcGCCGagcucgGCUGCa -3'
miRNA:   3'- -UUGUG-GgCCGGCGUA-CGGCga----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 45112 0.69 0.295829
Target:  5'- --aACUCGG-CGgGUGCCGCgaacACCGCg -3'
miRNA:   3'- uugUGGGCCgGCgUACGGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 12319 0.69 0.275074
Target:  5'- cGGCAUgCGGCU-CGUGCCGCaGCgCGCg -3'
miRNA:   3'- -UUGUGgGCCGGcGUACGGCGaUG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 12554 0.69 0.295829
Target:  5'- cGGCAggUCgCGGCgGCGcucgucgagcUGCUGCUGCCGCc -3'
miRNA:   3'- -UUGU--GG-GCCGgCGU----------ACGGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 16757 0.69 0.275074
Target:  5'- -uCGCCCGGCUGCGgccacuugaacuUGUCGU--CCGCg -3'
miRNA:   3'- uuGUGGGCCGGCGU------------ACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 38644 0.69 0.288778
Target:  5'- -uCAUCCGGcCCGCggcgGUGCCGaucgucACCGCg -3'
miRNA:   3'- uuGUGGGCC-GGCG----UACGGCga----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 6226 0.69 0.300844
Target:  5'- cAGCAaaauCCCGGCCGCgcAcaucgaggcgacugUGCCGCcguuCCGCa -3'
miRNA:   3'- -UUGU----GGGCCGGCG--U--------------ACGGCGau--GGCG- -5'
23978 3' -60.9 NC_005262.1 + 34042 0.69 0.300844
Target:  5'- cGACGCCgCGuuccgggaucgcuuGCCGCGUGCC-C-GCCGCg -3'
miRNA:   3'- -UUGUGG-GC--------------CGGCGUACGGcGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 14295 0.69 0.298686
Target:  5'- cGCGCCCGccgucaguGCCGCGUggaguuccggauggaGCgGCuUGCCGCa -3'
miRNA:   3'- uUGUGGGC--------CGGCGUA---------------CGgCG-AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 65 0.69 0.303013
Target:  5'- gGAgGCCgCGGCuCGCGaagaagucgGCCGC-GCCGCa -3'
miRNA:   3'- -UUgUGG-GCCG-GCGUa--------CGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 26807 0.68 0.325367
Target:  5'- aGGCGCCCGGCCuuGCAUcggaauucgagGCCGCgACgGg -3'
miRNA:   3'- -UUGUGGGCCGG--CGUA-----------CGGCGaUGgCg -5'
23978 3' -60.9 NC_005262.1 + 17644 0.68 0.31033
Target:  5'- cGCGCgCC-GCCGCGgcUGCCGCcucgcgcgcgACCGCg -3'
miRNA:   3'- uUGUG-GGcCGGCGU--ACGGCGa---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 46449 0.68 0.333085
Target:  5'- -cCGCCCGcGCCGgacccgaAUGCCGC-GCCGg -3'
miRNA:   3'- uuGUGGGC-CGGCg------UACGGCGaUGGCg -5'
23978 3' -60.9 NC_005262.1 + 31622 0.68 0.340937
Target:  5'- uGCACCUGcGCgGCAaGCCGacCUACgGCg -3'
miRNA:   3'- uUGUGGGC-CGgCGUaCGGC--GAUGgCG- -5'
23978 3' -60.9 NC_005262.1 + 3349 0.68 0.340937
Target:  5'- gAugACgaGGCCGCG-GCuCGCUagauGCCGCa -3'
miRNA:   3'- -UugUGggCCGGCGUaCG-GCGA----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 34967 0.68 0.340937
Target:  5'- cGGCGCUCGGCCGCAaGUCGaaGCUccagGCa -3'
miRNA:   3'- -UUGUGGGCCGGCGUaCGGCgaUGG----CG- -5'
23978 3' -60.9 NC_005262.1 + 58526 0.68 0.340937
Target:  5'- -cCGCCCuGCC-CGUGCUGCUGCaCGa -3'
miRNA:   3'- uuGUGGGcCGGcGUACGGCGAUG-GCg -5'
23978 3' -60.9 NC_005262.1 + 1121 0.68 0.340937
Target:  5'- -cCGCCucuugcucugCGGCCGC-UGCgggcuucgaUGCUGCCGCg -3'
miRNA:   3'- uuGUGG----------GCCGGCGuACG---------GCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 23845 0.68 0.340937
Target:  5'- --aGgCCGGCaCGCcgcccuUGCCGgUGCCGCc -3'
miRNA:   3'- uugUgGGCCG-GCGu-----ACGGCgAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 50483 0.68 0.31033
Target:  5'- cGACAUCaagccucaggaGGCCGCcaAUGCUGgaACCGCu -3'
miRNA:   3'- -UUGUGGg----------CCGGCG--UACGGCgaUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.