miRNA display CGI


Results 81 - 100 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 2141 0.68 0.348922
Target:  5'- cGCACgCUGGCUGgGaUGCuCGCUACgCGCc -3'
miRNA:   3'- uUGUG-GGCCGGCgU-ACG-GCGAUG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 11182 0.68 0.340937
Target:  5'- --uGCCCcGCCaaGCGUGCCaGCggGCCGCc -3'
miRNA:   3'- uugUGGGcCGG--CGUACGG-CGa-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 4756 0.68 0.340937
Target:  5'- --gAUCCGGCCGCGgcaugGCUGUUcaACCGa -3'
miRNA:   3'- uugUGGGCCGGCGUa----CGGCGA--UGGCg -5'
23978 3' -60.9 NC_005262.1 + 50483 0.68 0.31033
Target:  5'- cGACAUCaagccucaggaGGCCGCcaAUGCUGgaACCGCu -3'
miRNA:   3'- -UUGUGGg----------CCGGCG--UACGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 3349 0.68 0.340937
Target:  5'- gAugACgaGGCCGCG-GCuCGCUagauGCCGCa -3'
miRNA:   3'- -UugUGggCCGGCGUaCG-GCGA----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 1121 0.68 0.340937
Target:  5'- -cCGCCucuugcucugCGGCCGC-UGCgggcuucgaUGCUGCCGCg -3'
miRNA:   3'- uuGUGG----------GCCGGCGuACG---------GCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 58970 0.68 0.340937
Target:  5'- -cCAgCCGGCCGCcgGCgGCcucacgccucCCGCg -3'
miRNA:   3'- uuGUgGGCCGGCGuaCGgCGau--------GGCG- -5'
23978 3' -60.9 NC_005262.1 + 11747 0.68 0.325367
Target:  5'- -uCugCCGGCCaGCGUGCagCGCgacgccggcGCCGCc -3'
miRNA:   3'- uuGugGGCCGG-CGUACG--GCGa--------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 17857 0.68 0.324602
Target:  5'- uGCGCUCGGCCucgaauucgagcaGCGUGUCGU--CCGCc -3'
miRNA:   3'- uUGUGGGCCGG-------------CGUACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48127 0.68 0.317782
Target:  5'- cGCGCUugCGGgCGCG-GCCgGCUGCUGCg -3'
miRNA:   3'- uUGUGG--GCCgGCGUaCGG-CGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 63366 0.68 0.317782
Target:  5'- cAGCAgCCGGCCgucaaGCAggcgGCgGCUGCCa- -3'
miRNA:   3'- -UUGUgGGCCGG-----CGUa---CGgCGAUGGcg -5'
23978 3' -60.9 NC_005262.1 + 12891 0.68 0.31033
Target:  5'- cACGCgCCGGCUGCGcGCCGCccaaUGCu -3'
miRNA:   3'- uUGUG-GGCCGGCGUaCGGCGaug-GCG- -5'
23978 3' -60.9 NC_005262.1 + 17644 0.68 0.31033
Target:  5'- cGCGCgCC-GCCGCGgcUGCCGCcucgcgcgcgACCGCg -3'
miRNA:   3'- uUGUG-GGcCGGCGU--ACGGCGa---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 58526 0.68 0.340937
Target:  5'- -cCGCCCuGCC-CGUGCUGCUGCaCGa -3'
miRNA:   3'- uuGUGGGcCGGcGUACGGCGAUG-GCg -5'
23978 3' -60.9 NC_005262.1 + 34967 0.68 0.340937
Target:  5'- cGGCGCUCGGCCGCAaGUCGaaGCUccagGCa -3'
miRNA:   3'- -UUGUGGGCCGGCGUaCGGCgaUGG----CG- -5'
23978 3' -60.9 NC_005262.1 + 31622 0.68 0.340937
Target:  5'- uGCACCUGcGCgGCAaGCCGacCUACgGCg -3'
miRNA:   3'- uUGUGGGC-CGgCGUaCGGC--GAUGgCG- -5'
23978 3' -60.9 NC_005262.1 + 26807 0.68 0.325367
Target:  5'- aGGCGCCCGGCCuuGCAUcggaauucgagGCCGCgACgGg -3'
miRNA:   3'- -UUGUGGGCCGG--CGUA-----------CGGCGaUGgCg -5'
23978 3' -60.9 NC_005262.1 + 17085 0.68 0.325367
Target:  5'- cGCGCCCGucgacGCgGCggGCCGCgaggagguccACCGCg -3'
miRNA:   3'- uUGUGGGC-----CGgCGuaCGGCGa---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 40560 0.68 0.317782
Target:  5'- cGCGCCgGGCaacaccgGCgGUGCCGCgACCGUc -3'
miRNA:   3'- uUGUGGgCCGg------CG-UACGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 20575 0.68 0.317782
Target:  5'- gAGCAgCCCGGCgaGCA-GCgCGCggcgcGCCGCa -3'
miRNA:   3'- -UUGU-GGGCCGg-CGUaCG-GCGa----UGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.