miRNA display CGI


Results 41 - 60 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 52624 0.71 0.208871
Target:  5'- aAGCGCaCCGGCU-CGUGgCGCgcgACCGCa -3'
miRNA:   3'- -UUGUG-GGCCGGcGUACgGCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 17539 0.71 0.219792
Target:  5'- gGGCACgCGGUCGCGcgcgagGCgGCaGCCGCg -3'
miRNA:   3'- -UUGUGgGCCGGCGUa-----CGgCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 44005 0.71 0.219792
Target:  5'- -gUAgUCGGCCGCGguuggcGCCGCgcugACCGCc -3'
miRNA:   3'- uuGUgGGCCGGCGUa-----CGGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 21453 0.71 0.219792
Target:  5'- cGAguUCC-GCCGCuuugcGUGCCGCUACUGCu -3'
miRNA:   3'- -UUguGGGcCGGCG-----UACGGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 49315 0.71 0.225433
Target:  5'- cGCGCgCGGaCUGCGcGCCGCcgagGCCGCc -3'
miRNA:   3'- uUGUGgGCC-GGCGUaCGGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 27200 0.7 0.242489
Target:  5'- uGGCACUauCGGCCGCGUuCCGUUAcacugauCCGCg -3'
miRNA:   3'- -UUGUGG--GCCGGCGUAcGGCGAU-------GGCG- -5'
23978 3' -60.9 NC_005262.1 + 48445 0.7 0.243096
Target:  5'- cAugACCaCGcGCgCGUAUGCCGCgcggAUCGCg -3'
miRNA:   3'- -UugUGG-GC-CG-GCGUACGGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22560 0.7 0.245536
Target:  5'- gAACGCCuccauccggccuuagCGGCCGCAUGC-GCggcGCUGCu -3'
miRNA:   3'- -UUGUGG---------------GCCGGCGUACGgCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 2865 0.7 0.2555
Target:  5'- --aGCuuGGCCGaaauUGCCGUUgcGCCGCu -3'
miRNA:   3'- uugUGggCCGGCgu--ACGGCGA--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 58702 0.7 0.2555
Target:  5'- cAACAagCUGGCgGCAUGCCcgagGCgcugACCGCg -3'
miRNA:   3'- -UUGUg-GGCCGgCGUACGG----CGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 43823 0.7 0.2555
Target:  5'- cGGCGacaCGGCCGCggGCCG--GCCGCg -3'
miRNA:   3'- -UUGUgg-GCCGGCGuaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 378 0.7 0.261895
Target:  5'- cGACGCCU-GUCGCAaggaGCCGgaGCCGCg -3'
miRNA:   3'- -UUGUGGGcCGGCGUa---CGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 15264 0.7 0.261895
Target:  5'- gAACGCCgCGuagcGCUGCGUGCCGUccaacauCCGCg -3'
miRNA:   3'- -UUGUGG-GC----CGGCGUACGGCGau-----GGCG- -5'
23978 3' -60.9 NC_005262.1 + 39310 0.7 0.261895
Target:  5'- uAAUuCCCGGCCGCcUGCuUGCUgGCCGg -3'
miRNA:   3'- -UUGuGGGCCGGCGuACG-GCGA-UGGCg -5'
23978 3' -60.9 NC_005262.1 + 51381 0.7 0.261895
Target:  5'- cGACGCCggccaaGGCCGCGccUGaCCGUgugcACCGCg -3'
miRNA:   3'- -UUGUGGg-----CCGGCGU--AC-GGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22204 0.7 0.262542
Target:  5'- gAACGCCgGGCuCGCGcucgacaagcucacgGCCGC-GCCGCc -3'
miRNA:   3'- -UUGUGGgCCG-GCGUa--------------CGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 42991 0.69 0.271065
Target:  5'- cGCGCCgGGCCGCuucguGUcgggccaguucuucgGCCGCUACCu- -3'
miRNA:   3'- uUGUGGgCCGGCG-----UA---------------CGGCGAUGGcg -5'
23978 3' -60.9 NC_005262.1 + 12319 0.69 0.275074
Target:  5'- cGGCAUgCGGCU-CGUGCCGCaGCgCGCg -3'
miRNA:   3'- -UUGUGgGCCGGcGUACGGCGaUG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 16757 0.69 0.275074
Target:  5'- -uCGCCCGGCUGCGgccacuugaacuUGUCGU--CCGCg -3'
miRNA:   3'- uuGUGGGCCGGCGU------------ACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 57172 0.69 0.28186
Target:  5'- cGGCgACCCcucGCCGCucGUGUCGCUcCCGCu -3'
miRNA:   3'- -UUG-UGGGc--CGGCG--UACGGCGAuGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.